Difference between revisions of "OMP ST:1022 ! Escherichia coli K-12 JW5503"

From OMPwiki
(Table edited by Siegele via TableEdit)
(Table edited by Siegele via TableEdit)
Line 110: Line 110:
 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +F- +Lambda- +hsdR514 +lacZ4787(del) +rph-1 +tolC732(del)  -
 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +F- +Lambda- +hsdR514 +lacZ4787(del) +rph-1 +tolC732(del)  -
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
medium:SDS (0.5%)SDS (0.5, 1, 2, 3, or 4%)
+
medium:SDS (0.5%)SDS
 
|
 
|
 
*temperature:37C
 
*temperature:37C

Revision as of 19:10, 8 November 2018

Strain Summary

Strain Name

Escherichia coli K-12 JW5503

Synonyms

JW5503-1

Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 tolC732(del)::kan

Strain Reference

Coli Genetic Stock Center

Strain availability

Coli Genetic Stock Center

Ancestry

parent:OMP ST:800 ! Escherichia coli K-12 BW25113

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:934

OMP:0006167

abolished motility by swarming

Relative to: OMP_AN:881

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del) +tolC732(del) -IN(rrnD-rrnE)1

Condition differences:

no differences

  • temperature:33C
  • medium:swarming motility medium
 ECO:0007192

motility assay evidence used in manual assertion

PMID:17122336[1]

OMP_AN:27247

OMP:0007249

decreased resistance to a chemical

Relative to: OMP_AN:27248

Genotype differences:

+DE(araD-araB)567 +DE(rhaD-rhaB)568 +F- +Lambda- +hsdR514 +lacZ4787(del) +rph-1 +tolC732(del) -

Condition differences:

medium:SDS (0.5%)SDS

  • temperature:37C
  • medium:LB agar
  • medium:SDS (0.5%)
 ECO:0007005

high throughput direct assay evidence used in manual assertion

PMID:21185072[2]

towards(CHEBI:8984) SDS

fitness score -23.2

edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
  2. ↑ Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=OMP_ST:1022_!_Escherichia_coli_K-12_JW5503&oldid=129633"