OMP ST:1018 ! Escherichia coli K-12 JW0145
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 JW0145 |
|---|---|
| Synonyms |
JW0145-1 |
| Taxon Information |
|
| Genotype |
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 mrcB765(del)::kan |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:930 |
OMP:0007092 |
decreased motility by swarming |
Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del) +mrcB765(del) -IN(rrnD-rrnE)1 Condition differences: no differences |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:28066 |
OMP:0007886 |
decreased resistance to a metal |
Relative to: OMP_AN:27579 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:86318) CuCl2 dihydrate |
normalized fitness= -3.56 | ||
|
OMP_AN:28067 |
OMP:0007074 |
increased growth factor requirement |
Relative to: OMP_AN:27603 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
normalized fitness= -3.19 | ||
|
OMP_AN:28068 |
OMP:0007070 |
decreased organic carbon source utilization |
Relative to: OMP_AN:27613 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:42758) D-Glucose anhydrous |
normalized fitness= -3.19 | ||
|
OMP_AN:28069 |
OMP:0007833 |
decreased resistance to sulfonamde |
Relative to: OMP_AN:27577 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:32164) Sulfamonomethoxine |
normalized fitness= -3.44 | ||
|
OMP_AN:28070 |
OMP:0007250 |
increased resistance to a chemical |
Relative to: OMP_AN:27568 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:53188) (±)-Verapamil hydrochloride |
| ||
|
OMP_AN:28071 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27589 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam |
| ||
|
OMP_AN:28072 |
OMP:0007521 |
decreased population growth in high osmolarity |
Relative to: OMP_AN:27595 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:26710) NaCl |
normalized fitness= -3.6 | ||
|
OMP_AN:28073 |
OMP:0006044 |
decreased resistance to beta-lactam |
Relative to: OMP_AN:27538 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:52134) Oxacillin sodium salt |
normalized fitness= -4.33 | ||
|
OMP_AN:28074 |
OMP:0007008 |
decreased population growth at acidic pH |
Relative to: OMP_AN:27622 Genotype differences: +mrcB765(del) Condition differences: pH:4.0? |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
normalized fitness= -7.63 | |||
|
OMP_AN:28075 |
OMP:0007879 |
decreased resistance to an antimicrobial agent |
Relative to: OMP_AN:27500 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
towards some (CHEBI:45924) Trimethoprim |
normalized fitness= -3.28 | ||
|
OMP_AN:28076 |
OMP:0005098 |
decreased resistance to UV radiation |
Relative to: OMP_AN:27619 Genotype differences: +mrcB765(del) Condition differences: no differences |
|
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
UV treatment for 18 sec normalized fitness= -5.17 | |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Inoue, T et al. (2007) Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. J. Bacteriol. 189 950-7 PubMed OMPwiki page
- ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 Nichols, RJ et al. (2011) Phenotypic landscape of a bacterial cell. Cell 144 143-56 PubMed OMPwiki page
e
o
- OMP:0005098 ! decreased resistance to UV radiation
- OMP:0006044 ! decreased resistance to beta-lactam
- OMP:0007008 ! decreased growth at acidic pH
- OMP:0007070 ! decreased organic carbon source utilization
- OMP:0007074 ! increased growth factor requirement
- OMP:0007092 ! decreased motility by swarming
- OMP:0007250 ! increased resistance to a chemical
- OMP:0007521 ! decreased population growth in high osmolarity
- OMP:0007833 ! decreased resistance to sulfonamde
- OMP:0007879 ! decreased resistance to an antimicrobial agent
- OMP:0007886 ! decreased resistance to a metal
