OMP ST:773 ! Escherichia coli K-12 AW518
Contents
Strain Summary
| Strain Name |
AW518 |
|---|---|
| Synonyms | |
| Taxon Information |
|
| Genotype |
Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsr-1 tsx-78 xylA5 |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.[2]
The tsr mutation in AW518 was named tsr-1 in Hedblom and Adler[3].
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:47 |
OMP:0000005 |
presence of cell motility |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000181 |
in vitro assay evidence |
||||
|
OMP_AN:48 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:45 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0000181 |
in vitro assay evidence |
||||
|
OMP_AN:49 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:46 Genotype differences: +tsr-1 Condition differences: medium:buffer + serine (CHEBIbuffer;serine (CHEBI |
medium:buffer + serine (CHEBI:17115) |
ECO:0000181 |
in vitro assay evidence |
||||
|
OMP_AN:341 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:403 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0007187 |
tumble frequency assay evidence used in manual assertion |
CHEBI:30089 acetate |
|||
|
OMP_AN:342 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:404 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:16150 benzoate |
|||
|
OMP_AN:343 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:405 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:35581 indole |
|||
|
OMP_AN:344 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:406 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:15603 leucine |
|||
|
OMP_AN:345 |
OMP:0007053 |
increased positive chemotaxis |
Relative to: OMP_AN:105 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:17053 aspartate |
|||
|
OMP_AN:346 |
OMP:0007053 |
increased positive chemotaxis |
Relative to: OMP_AN:102 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:17306 maltose |
|||
|
OMP_AN:347 |
OMP:0007053 |
increased positive chemotaxis |
Relative to: OMP_AN:401 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:28260 galactose |
|||
|
OMP_AN:348 |
OMP:0007053 |
increased positive chemotaxis |
Relative to: OMP_AN:402 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:33942 ribose |
|||
|
OMP_AN:349 |
OMP:0007054 |
increased negative chemotaxis |
Relative to: OMP_AN:407 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
||||
|
OMP_AN:350 |
OMP:0007054 |
increased negative chemotaxis |
Relative to: OMP_AN:408 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005608 |
tumble frequency assay evidence |
CHEBI:48828 Co(II) |
|||
|
OMP_AN:422 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:421 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0007187 |
tumble frequency assay evidence used in manual assertion |
CHEBI:17115 serine |
|||
|
OMP_AN:494 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:492 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16977 alanine |
Threshold for response increased | ||
|
OMP_AN:495 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:488 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CEHBI:17196 asparagine |
Threshold for response increased | ||
|
OMP_AN:496 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:489 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17561 cysteine |
Threshold for response increased | ||
|
OMP_AN:497 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:491 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
Threshold for response increased | |||
|
OMP_AN:498 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:486 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17715 serine |
Threshold for response increased | ||
|
OMP_AN:499 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:487 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16857 threonine |
Threshold for response incresased | ||
|
OMP_AN:500 |
OMP:0007053 |
increased positive chemotaxis |
Relative to: OMP_AN:493 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16643 methionine |
|||
|
OMP_AN:562 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:543 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17115 L-serine |
Synthetic amino acid | ||
|
OMP_AN:563 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:547 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15428 glycine |
Synthetic amino acid | ||
|
OMP_AN:564 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:550 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16857 L-threonine |
Synthetic amino acid | ||
|
OMP_AN:565 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:551 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17203 L-proline |
Synthetic amino acid | ||
|
OMP_AN:566 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:553 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15971 L-histidine |
Synthetic amino acid | ||
|
OMP_AN:567 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:554 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:17191 L-isoleucine |
Synthetic amino acid | ||
|
OMP_AN:568 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:555 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:15603 L-leucine |
Synthetic amino acid | ||
|
OMP_AN:569 |
OMP:0007005 |
decreased negative chemotaxis |
Relative to: OMP_AN:557 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:16828 L-tryptophan |
Synthetic amino acid | ||
|
OMP_AN:585 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: OMP_AN:573 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:48607 LiCl |
Salt chemotaxis | ||
|
OMP_AN:586 |
OMP:0000054 |
absence of positive chemotaxis |
Relative to: OMP_AN:578 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:6636 MgCl2 |
Salt chemotaxis | ||
|
OMP_AN:587 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:572 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:31206 NH4Cl |
Salt chemotaxis | ||
|
OMP_AN:588 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:576 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
Salt chemotaxis | |||
|
OMP_AN:589 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:577 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
Salt chemotaxis | |||
|
OMP_AN:590 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:582 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:28741 NaF |
Salt chemotaxis | ||
|
OMP_AN:591 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:574 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:26710 NaCl |
Salt chemotaxis | ||
|
OMP_AN:592 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:584 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:63004 NaBr |
Salt chemotaxis | ||
|
OMP_AN:593 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:583 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:33167 NaI |
Salt chemotaxis | ||
|
OMP_AN:594 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:575 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:32588 KCl |
Salt chemotaxis | ||
|
OMP_AN:595 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:580 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:63317 BaCl2 |
Salt chemotaxis | ||
|
OMP_AN:596 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:581 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
CHEBI:3312 CaCl2 |
Salt chemotaxis | ||
|
OMP_AN:589 |
OMP:0007041 |
decreased positive chemotaxis |
Relative to: OMP_AN:577 Genotype differences: +tsr-1 Condition differences: no differences |
|
ECO:0005609 |
capillary assay evidence |
Salt chemotaxis
| |||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Armstrong, JB & Adler, J (1969) Location of genes for motility and chemotaxis on the Escherichia coli genetic map. J. Bacteriol. 97 156-61 PubMed OMPwiki page
- ↑ Armstrong, JB & Adler, J (1967) Genetics of motility in Escherichia coli: complementation of paralysed mutants. Genetics 56 363-73 PubMed OMPwiki page
- ↑ Hiatt, RA et al. (1978) Limitations of the intradermal test for schistosomiasis mansoni: experience from epidemiologic studies in a Puerto Rican community. Am. J. Trop. Med. Hyg. 27 535-41 PubMed OMPwiki page
- ↑ 4.0 4.1 4.2 Hazelbauer, GL et al. (1969) Escherichia coli mutants defective in chemotaxis toward specific chemicals. Proc. Natl. Acad. Sci. U.S.A. 64 1300-7 PubMed OMPwiki page
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Springer, MS et al. (1977) Sensory transduction in Escherichia coli: two complementary pathways of information processing that involve methylated proteins. Proc. Natl. Acad. Sci. U.S.A. 74 3312-6 PubMed OMPwiki page
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Mesibov, R & Adler, J (1972) Chemotaxis toward amino acids in Escherichia coli. J. Bacteriol. 112 315-26 PubMed OMPwiki page
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Hedblom, ML & Adler, J (1983) Chemotactic response of Escherichia coli to chemically synthesized amino acids. J. Bacteriol. 155 1463-6 PubMed OMPwiki page
- ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 Qi, YL & Adler, J (1989) Salt taxis in Escherichia coli bacteria and its lack in mutants. Proc. Natl. Acad. Sci. U.S.A. 86 8358-62 PubMed OMPwiki page
e
o
- OMP:0000005 ! presence of motility
- OMP:0000054 ! absence of positive chemotaxis
- OMP:0007005 ! decreased negative chemotaxis
- OMP:0007041 ! decreased positive chemotaxis
- OMP:0007053 ! increased positive chemotaxis
- OMP:0007054 ! increased negative chemotaxis
- OMP ST:772 ! Escherichia coli K-12 AW405 derivatives
