OMP ST:6132 ! Escherichia coli K-12 JW1872

Strain Summary

Strain Name	Escherichia coli K-12 JW1872
Synonyms	JW1872-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cheB736(del)::kan
Strain Reference	Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:1202		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:881 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cheB736(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:1203		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:882 Genotype differences: +DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +cheB736(del) -IN(rrnD-rrnE)1 Condition differences: no differences	temperature:33C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:17122336
OMP_AN:30735		OMP:0007902	increased resistance to bile acids	Relative to: OMP_AN:27585 Genotype differences: +lacZ4787(del)( +cheB736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Cholate sodium hydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23679061) Cholate sodium hydrate	chemical concentration= 1 % normalized fitness= 3.32
OMP_AN:30736		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27579 Genotype differences: +lacZ4787(del)( +cheB736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Copper stress-CuCl2 dihydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate	chemical concentration= 4 mM (LB) normalized fitness= -3.5
OMP_AN:30737		OMP:0007903	decreased resistance to bile acids	Relative to: OMP_AN:27586 Genotype differences: +lacZ4787(del)( +cheB736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Deoxycholate sodium	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:9177) Deoxycholate sodium	chemical concentration= 0.5 % normalized fitness= -3.4
OMP_AN:30738		OMP:0007878	increased resistance to an antimicrobial agent	Relative to: OMP_AN:27545 Genotype differences: +lacZ4787(del)( +cheB736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:Isoniazid	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:6030) Isoniazid	chemical concentration= 1 mM normalized fitness= 3.85
OMP_AN:30739		OMP:0005098	decreased resistance to UV radiation	Relative to: OMP_AN:27619 Genotype differences: +lacZ4787(del)( +cheB736(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:LB agar medium:UV	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072		chemical concentration= 18 sec normalized fitness= -4.03
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References

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