OMP ST:159 ! Escherichia coli K-12 MG1655
Contents
Strain Summary
| Strain Name |
Escherichia coli K-12 MG1655 |
|---|---|
| Synonyms |
CGSC #6300, ATCC 47076 |
| Taxon Information |
|
| Genotype |
F- Lambda- rph-1 |
| Strain Reference | |
| Strain availability | |
| Ancestry | |
| Annotated phenotypes |
|
Notes
Phenotype Annotation
| Annotation ID | Qualifier | OMP ID | OMP term name | Relative phenotype information | Experimental condition | ECO ID | ECO term name | Reference | Annotation Extension | Notes |
|---|---|---|---|---|---|---|---|---|---|---|
|
OMP_AN:357 |
OMP:0007253 |
presence of host colonization |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
ECO:0001027 |
colony counting evidence |
|||||
|
OMP_AN:1353 |
OMP:0000067 |
presence of cell motility by swarming |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0005803 |
motility assay evidence |
||||
|
OMP_AN:7646 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P28307 csgA |
|||
|
OMP_AN:7647 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P77257 lsrA |
|||
|
OMP_AN:7648 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76142 lsrB |
|||
|
OMP_AN:7649 |
OMP:0000253 |
gene expression phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76143 lsrF |
|||
|
OMP_AN:7650 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7646 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P28307 csgA |
|||
|
OMP_AN:7651 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7647 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P77257 lsrA |
|||
|
OMP_AN:7652 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7648 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76142 lsrB |
|||
|
OMP_AN:7653 |
OMP:0000267 |
increased gene expression |
Relative to: OMP_AN:7649 Genotype differences: no differences Condition differences: medium:Acacia honey (0.5%)? |
|
ECO:0000109 |
reverse transcription polymerase chain reaction evidence |
UniProtKB:P76143 lsrF |
|||
|
OMP_AN:7675 |
OMP:0000176 |
biofilm phenotype |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000182 |
in vitro culture assay evidence |
Crystal violet biofilm assay | |||
|
OMP_AN:7676 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Honey (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
Crystal violet biofilm assay | |||
|
OMP_AN:7677 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Glucose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17234 glucose |
Crystal violet biofilm assay | ||
|
OMP_AN:7678 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Fructose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:28757 fructose |
Crystal violet biofilm assay | ||
|
OMP_AN:7679 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Sucrose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17992 sucrose |
Crystal violet biofilm assay | ||
|
OMP_AN:7680 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Lactose (0.5%)? |
|
ECO:0000182 |
CHEBI:17716 lactose |
Crystal violet biofilm assay | |||
|
OMP_AN:7681 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Galactose (0.5%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:28260 galactose |
Crystal violet biofilm assay | ||
|
OMP_AN:7682 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:Methylglyoxal (0.001%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:17158 methylglyoxal |
Crystal violet biofilm assay | ||
|
OMP_AN:7683 |
OMP:0007020 |
increased biofilm formation |
Relative to: OMP_AN:7675 Genotype differences: no differences Condition differences: medium:H2O2 (0.0005%)? |
|
ECO:0000182 |
in vitro culture assay evidence |
CHEBI:16240 H2O2 |
Crystal violet biofilm assay | ||
|
OMP_AN:8278 |
OMP:0005337 |
absence of cell lysis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000182 |
in vitro culture assay evidence |
||||
|
OMP_AN:8307 |
OMP:0005337 |
absence of cell lysis |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0000182 |
in vitro culture assay evidence |
||||
|
OMP_AN:27250 |
OMP:0007181 |
presence of anaerobic respiration |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0001165 |
colony counting evidence used in manual assertion |
CHEBI:16240 hydrogen peroxide |
Figure 8 | ||
|
OMP_AN:27302 |
OMP:0007595 |
presence of population growth |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0001258 |
spectrophotometry evidence used in manual assertion |
Figure 1 | |||
|
OMP_AN:27303 |
OMP:0007595 |
presence of population growth |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0001258 |
spectrophotometry evidence used in manual assertion |
Figure 1 | |||
|
OMP_AN:37557 |
presence of growth at acidic pH |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0001847 |
table 3 | |||||
|
OMP_AN:37599 |
OMP:0007876 |
resistant to an antimicrobial agent |
Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare |
|
ECO:0007699 |
cell growth assay evidence used in manual assertion |
CHEBI:45773 streptolydigin |
E. coli K-12 is naturally resistant to streptolydigin, presumably because the drug is unable to cross the outer membrane. | ||
Additional Information
Links
References
See Help:References for how to manage references in OMPwiki.
- ↑ Jensen, KF (1993) The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J. Bacteriol. 175 3401-7 PubMed OMPwiki page
- ↑ Autieri, SM et al. (2007) L-fucose stimulates utilization of D-ribose by Escherichia coli MG1655 DeltafucAO and E. coli Nissle 1917 DeltafucAO mutants in the mouse intestine and in M9 minimal medium. Infect. Immun. 75 5465-75 PubMed OMPwiki page
- ↑ Gómez-Gómez, JM et al. (2007) A novel role for RecA under non-stress: promotion of swarming motility in Escherichia coli K-12. BMC Biol. 5 14 PubMed OMPwiki page
- ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 4.15 4.16 Lee, JH et al. (2011) Low concentrations of honey reduce biofilm formation, quorum sensing, and virulence in Escherichia coli O157:H7. Biofouling 27 1095-104 PubMed OMPwiki page
- ↑ 5.0 5.1 Paradis-Bleau, C et al. (2014) A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism. PLoS Genet. 10 e1004056 PubMed OMPwiki page
- ↑ Khademian, M & Imlay, JA (2017) cytochrome peroxidase is a respiratory oxidase that enables the use of hydrogen peroxide as a terminal electron acceptor. Proc. Natl. Acad. Sci. U.S.A. 114 E6922-E6931 PubMed OMPwiki page
- ↑ 7.0 7.1 Choudhury, P & Flower, AM (2015) Efficient assembly of ribosomes is inhibited by deletion of bipA in Escherichia coli. J. Bacteriol. 197 1819-27 PubMed OMPwiki page
- ↑ Vivijs, B et al. (2016) Identification of Genes Required for Growth of MG1655 at Moderately Low pH. Front Microbiol 7 1672 PubMed OMPwiki page
- ↑ Heisler, LM et al. (1993) Four contiguous amino acids define the target for streptolydigin resistance in the beta subunit of Escherichia coli RNA polymerase. J Biol Chem 268 25369-75 PubMed OMPwiki page
e
- ECO:0000109 ! reverse transcription polymerase chain reaction evidence
- ECO:0000182 ! in vitro culture assay evidence
- ECO:0001027 ! colony counting evidence
- ECO:0001165 ! colony counting evidence used in manual assertion
- ECO:0001258 ! spectrophotometry evidence used in manual assertion
- ECO:0005803 ! motility assay evidence
- ECO:0007699 ! cell growth assay evidence used in manual assertion
o
- OMP:0000067 ! presence of motility by swarming
- OMP:0000176 ! biofilm phenotype
- OMP:0000253 ! gene expression phenotype
- OMP:0000267 ! increased gene expression
- OMP:0005337 ! absence of cell lysis
- OMP:0007020 ! increased biofilm formation
- OMP:0007181 ! presence of anaerobic respiration
- OMP:0007253 ! presence of colonization of a host
- OMP:0007595 ! presence of population growth
- OMP:0007876 ! resistant to an antimicrobial agent
