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<center>Questions? Contact us at {{Email}}.</center>
 
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<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
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Web-based community resource designed to display microbial phenotypes and the methods used to study them.
<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to [[OMPWiki:About|OMPWiki]],</div>
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Web-based community resource designed to display microbial phenotypes and the methods used to study them.<br />
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== Phenotypes (OMP) ==
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* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
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* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
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* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]
 
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* [[:Category:Methods|Methods]]
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== Evidence & Conclusion Ontology ==
* [[OmpWiki:Wishlist|Wishlist]]
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* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [[OmpWiki:Membership|Membership]]
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* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [[:Category:Help|Help]]
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* [https://github.com/evidenceontology/evidenceontology ECO main repository]
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* [http://evidenceontology.org Official ECO website]
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* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
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== Misc. ==
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[[OmpWiki:Membership|Membership]]
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;Data browsers
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*[[Special:Peters2016|Peters (2016) Bacillus CRISPRi data]]
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*[http://ecoliwiki.net/tools/chemgen/ Nichols et al. (2010) Phenotypic landscape of a bacterial cell.] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.
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[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker]
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A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
 
A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in flies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent Vibrio fischeri bacterium and its squid host Euprymna scolopes. Characterization of phenotypes is critically important for medical microbial identification, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as Escherichia coli. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.
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and coat color are phenotypic traits that can be observed in flies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio fischeri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identification, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.
  
== Pages of Interest ==
 
*[[Categories to Search]]
 
*[[MOO notes]]
 
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
 
  
 
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===Upcoming News===
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===News===
*First OMP release is coming soon
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<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>
  
*Look for OMP at ICBO and Molecular Genetics of Bacteria and Phage meetings this summer!!
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=== Search Pages of Interest ===
 
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*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*Modifying the phenotype annotation tables to reflect OMP and ECO terms
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*We are starting to collect [[Categories to Search|information on methods]].  You can contribute to OMP by adding methods and/or references.
 
 
*AZ learned how to format the main page :)
 
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Revision as of 16:16, 14 June 2017

Questions? Contact us at microbialphenotypes@gmail.com.

Web-based community resource designed to display microbial phenotypes and the methods used to study them.

Phenotypes (OMP)

Evidence & Conclusion Ontology

Misc.

Membership

Data browsers

Bug tracker

What are microbial phenotypes & why do they need an ontology?

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod, and coat color are phenotypic traits that can be observed in flies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent Vibrio fischeri bacterium and its squid host Euprymna scolopes. Characterization of phenotypes is critically important for medical microbial identification, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as Escherichia coli. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.


News

OMP April, 2019 Release
We are pleased to announce the April, 2019 release of the OMP. The latest release is available at,... (Read more)
OMP March, 2019 Release
We are pleased to announce the March, 2019 release of the OMP. The latest release is available at,... (Read more)
OMP February, 2019 Release
We are pleased to announce the February, 2019 release of the OMP. The latest release is available at,... (Read more)

Search Pages of Interest