OMP ST:73738 ! Escherichia coli K-12 JW3958

Strain Summary

Strain Name	Escherichia coli K-12 JW3958
Synonyms	JW3958-1
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: K-12 NCBI Taxonomy ID: 83333
Genotype	DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 thiC765(del)::FRT-kan-FRT
Strain Reference	PMID:16738554 Coli Genetic Stock Center
Strain availability	Coli Genetic Stock Center
Ancestry	parent:OMP ST:800 ! Escherichia coli K-12 BW25113
Annotated phenotypes
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Phenotype Annotation

Annotation ID	Qualifier	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:34850		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27606 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -4.58
OMP_AN:34851		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27616 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:N-Acetyl-D-glucosamine	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:506227) N-Acetyl-D-glucosamine	chemical concentration= 0.15% normalized fitness= -4.58
OMP_AN:34852		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27603 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.34
OMP_AN:34853		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27613 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-Glucose anhydrous	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:42758) D-Glucose anhydrous	chemical concentration= 0.2% normalized fitness= -6.34
OMP_AN:34854		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27604 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -3.35
OMP_AN:34855		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27614 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:Glycerol	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:17754) Glycerol	chemical concentration= 0.4% normalized fitness= -3.35
OMP_AN:34856		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27605 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -3.13
OMP_AN:34857		OMP:0007070	decreased organic carbon source utilization	Relative to: OMP_AN:27615 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:M9 medium:D-(+) Maltose monohydrate	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CID:23615261) D-(+) Maltose monohydrate	chemical concentration= 0.1% normalized fitness= -3.13
OMP_AN:34858		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27600 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:NH4Cl	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31206) NH4Cl	chemical concentration= 9.5mm normalized fitness= -4.24
OMP_AN:34859		OMP:0007032	decreased utilization of inorganic nitrogen source	Relative to: OMP_AN:27610 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:NH4Cl	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:31206) NH4Cl	chemical concentration= 9.5mm normalized fitness= -4.24
OMP_AN:34860		OMP:0007075	decreased growth factor requirement	Relative to: OMP_AN:27598 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron excess-FeSO4 heptahydride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride	chemical concentration= 1mM (MOPS; normal 100uM) normalized fitness= -4.28
OMP_AN:34861		OMP:0007886	decreased resistance to a metal	Relative to: OMP_AN:27608 Genotype differences: +lacZ4787(del)( +thiC765(del) -lacZ4787(del) Condition differences: no differences	temperature:37C medium:MOPS medium:Iron excess-FeSO4 heptahydride	ECO:0007005	high throughput direct assay evidence used in manual assertion	PMID:21185072	towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride	chemical concentration= 1mM (MOPS; normal 100uM) normalized fitness= -4.28
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References

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