Difference between revisions of "Sandbox"

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(Undo revision 47301 by Siegele (talk))
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{|  id="P575f0b44a3cc0"  class=" tableEdit Strain_info_table" 
  
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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BW25113
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Eschericia coli
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*Subspecies and/or strain: K-12
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*NCBI Taxonomy ID: 83333
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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*other:[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
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*PMID:10829079
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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ancestor:[[OMP ST:174 ! Escherichia coli K-12 W1485]]
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
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a mutation or genetic difference within a strain
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*Taxon: Taxon Escherichia coli/n*Strain/n*Substrain/n*TaxonID
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a mutation or genetic difference within a strain
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*Taxon: A
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*Strain: B
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A
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*Taxon: Escherichia coli
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*Strain: K-12
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*Substrain: MG1655
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a mutation or genetic difference within a strain
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*Taxon: A
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*Strain: B
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*Substrain: C
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*NCBI Taxon ID: D
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*Experimental Condition: 10 mM aspartate
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Revision as of 15:05, 25 January 2017

You can add free text to the wiki.


Strain Name

BW25113

Synonyms
Taxon Information
  • Pangenome: Eschericia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514

Strain Reference
Strain availability

CGSC

Ancestry

ancestor:OMP ST:174 ! Escherichia coli K-12 W1485

Annotated phenotypes


edit table

how do I add italics?


Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status

a mutation or genetic difference within a strain

  • Taxon: Taxon Escherichia coli/n*Strain/n*Substrain/n*TaxonID
  • Genotype of Reference Strain:
  • Reference Condition:

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:

A

  • Taxon: Escherichia coli
  • Strain: K-12
  • Substrain: MG1655
  • Genotype of Reference Strain:
  • Reference Condition:

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:
  • Experimental Condition: 10 mM aspartate


edit table



Testing things have been moved over to the development site. If this code doesn't work there, then we've got a problem. --DanielRenfro 21:05, 5 May 2011 (UTC)


<methodinput> type=create bgcolor = #dddddd labeltext=Create a new Methods page: editintro=MediaWiki: buttonlabel=Create preload=Template:Method width=32 break=no </methodinput>


Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:50

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30
  • medium:sporulation medium

PMID:2842295[2]

OMP_AN:51

OMP:0000035

malformed pilus

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

temperature:37

PMID:12736[3]

OMP_AN:7750

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:pH 7
  • temperature:30C
  • medium:maltose
  • medium:minimal chemotaxis medium
 ECO:0005803

motility assay evidence

PMID:5335897[4]

maltose


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  1. ↑ Datsenko, KA & Wanner, BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97 6640-5 PubMed OMPwiki page
  2. ↑ Kato, J et al. (1988) Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli. J. Bacteriol. 170 3967-77 PubMed OMPwiki page
  3. ↑ Piggot, PJ & Coote, JG (1976) Genetic aspects of bacterial endospore formation. Bacteriol Rev 40 908-62 PubMed OMPwiki page
  4. ↑ Armstrong, JB et al. (1967) Nonchemotactic mutants of Escherichia coli. J. Bacteriol. 93 390-8 PubMed OMPwiki page
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