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| − | __TOC__
| + | #redirect [[OMP_ST:773_!_Strain:Escherichia coli K-12 AW518]] |
| − | | |
| − | ==Strain Summary==
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| − | <protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac-->
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| − | <!--
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| − | ******************************************************************************************
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| − | *
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| − | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **
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| − | *
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| − | ****************************************************************************************** -->
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| − | {| id="J556e2aea143ac" class=" tableEdit Strain_info_table"
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| − | | |
| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Strain Name
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| − | ||
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| − | AW518
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| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Synonyms
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| − | ||
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| − | | |
| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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| − | ||
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| − | *Pangenome: Escherichia coli
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| − | *Subspecies and/or strain: Taxon: K-12
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| − | *NCBI Taxonomy ID: NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Genotype
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| − | ||
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| − | Lambda- araC14 fhuA31 galK2(Oc) galT22 glnX44(AS) hisG4(Oc) lacY1 leuB6(Am) mgl-51 mtl-1 rfbC1 rpsL136(StrR) thiE1 thr-1 tsr-1 tsx-78 xylA5
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| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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| − | ||
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| − | PMID:4884810
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| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Strain availability
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| − | ||
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| − | | |
| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Ancestry
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| − | ||
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| − | parent:AW405
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| − | |-
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| − | !align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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| − | ||
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| − | | |
| − | | |
| − | |- class="tableEdit_footer"
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| − | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac&page=5935&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
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| − | |}
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| − | <noinclude>
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| − | <!-- OMP category tags -->[[Category:Strains that need OMP_ST accessions]]
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| − | </noinclude>
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| − | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.J556e2aea143ac--></protect>
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| − | | |
| − | ==Notes==
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| − | | |
| − | AW405 is a derivative of AW330. The his-4 allele was introduced from strain AT1372[2] by transduction with P1, followed by penicillin selection.<ref name='PMID:4861166'/>
| |
| − | | |
| − | ==Phenotype Annotation==
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| − | <protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.Z556e2aea173f0-->
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| − | <!--
| |
| − | ******************************************************************************************
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| − | *
| |
| − | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. **
| |
| − | *
| |
| − | ****************************************************************************************** -->
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| − | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Z556e2aea173f0" class=" tableEdit OMP_annotation_table dataTable"
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| − | |- align='left' bgcolor='#CCCCFF'
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| − | !|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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| − | |-
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| − | |
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| − | OMP_AN:47
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| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0000005
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| − | |
| |
| − | presence of cell motility
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| − | |
| |
| − | Relative to:
| |
| − | | |
| − | <hr>Genotype differences:<br>
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| − | Nothing to compare<br/>
| |
| − | <hr>Condition differences:<br>
| |
| − | Nothing to compare<br/>
| |
| − | |
| |
| − | *temperature:35C
| |
| − | *medium:semi-solid tryptone agar
| |
| − | |
| |
| − | ECO:0000181
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| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4916925
| |
| − | |
| |
| − | | |
| − | |
| |
| − |
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:48
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:45
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:35C
| |
| − | *medium:semi-solid tryptone agar
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4916925
| |
| − | |
| |
| − | | |
| − | |
| |
| − |
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:49
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:46
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | medium:buffer + serine (CHEBIbuffer;serine (CHEBI
| |
| − | |
| |
| − | medium:buffer + serine (CHEBI:17115)
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| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4916925
| |
| − | |
| |
| − | | |
| − | |
| |
| − |
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:341
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007005
| |
| − | |
| |
| − | decreased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:403
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:acetate
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:30089 acetate
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:342
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007005
| |
| − | |
| |
| − | decreased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:404
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:benzoate
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:16150 benzoate
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:343
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007005
| |
| − | |
| |
| − | decreased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:405
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:indole
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:35581 indole
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:344
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007005
| |
| − | |
| |
| − | decreased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:406
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:leucine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:15603 leucine
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:345
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007053
| |
| − | |
| |
| − | increased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:105
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:aspartate
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | | |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:346
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007053
| |
| − | |
| |
| − | increased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:102
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:maltose
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:17306 maltose
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:347
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007053
| |
| − | |
| |
| − | increased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:401
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:galactose
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:28260 galactose
| |
| − | |
| |
| − | Capillary assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:348
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007053
| |
| − | |
| |
| − | increased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:402
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:ribose
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:33942 ribose
| |
| − | |
| |
| − | Capillary assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:349
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007054
| |
| − | |
| |
| − | increased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:407
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:Ni(II)
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | | |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:350
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007054
| |
| − | |
| |
| − | increased negative chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:408
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:Co(II)
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:48828 Co(II)
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:422
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:421
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | +tsr-1
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:serine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:333433
| |
| − | |
| |
| − | CHEBI:17115 serine
| |
| − | |
| |
| − | Temporal assay
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:494
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:492
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:alanine
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CHEBI:16977 alanine
| |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response increased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:495
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:488
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:asparagine
| |
| − | *medium:chemotaxis medium
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CEHBI:17196 asparagine
| |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response increased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:496
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:489
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:cysteine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CHEBI:17561 cysteine
| |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response increased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:497
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:491
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:glycine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | | |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response increased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:498
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:486
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:serine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CHEBI:17715 serine
| |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response increased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:499
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007041
| |
| − | |
| |
| − | decreased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:487
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:threonine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CHEBI:16857 threonine
| |
| − | |
| |
| − | Capillary assay
| |
| − | Threshold for response incresased
| |
| − | |-
| |
| − | |
| |
| − | OMP_AN:500
| |
| − | |
| |
| − | | |
| − | |
| |
| − | OMP:0007053
| |
| − | |
| |
| − | increased positive chemotaxis
| |
| − | |
| |
| − | Relative to: OMP_AN:493
| |
| − | | |
| − | <hr>Genotype differences:<br>
| |
| − | no differences
| |
| − | <hr>Condition differences:<br>
| |
| − | no differences
| |
| − | |
| |
| − | *temperature:30C
| |
| − | *medium:chemotaxis medium
| |
| − | *medium:methionine
| |
| − | |
| |
| − | ECO:0000181
| |
| − | |
| |
| − | in vitro assay evidence
| |
| − | |
| |
| − | PMID:4562400
| |
| − | |
| |
| − | CHEBI:16643 methionine
| |
| − | |
| |
| − | Capillary assay
| |
| − | | |
| − | |- class="tableEdit_footer"
| |
| − | |<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.5935.Z556e2aea173f0&page=5935&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
| |
| − | |}
| |
| − | <noinclude>
| |
| − | <!-- OMP category tags -->
| |
| − | </noinclude>
| |
| − | <!--box uid=d41d8cd98f00b204e9800998ecf8427e.5935.Z556e2aea173f0--></protect>
| |
| − | | |
| − | | |
| − | ==Additional Information==
| |
| − | | |
| − | | |
| − | ==Links==
| |
| − | | |
| − | | |
| − | ==References==
| |
| − | {{RefHelp}}<references/>
| |
| − | | |
| − | [[Category:Strain:Escherichia coli K-12 AW405]]
| |
