Difference between revisions of "OMP ST:839 ! Escherichia coli K-12 RK5267"

Revision as of 13:07, 23 July 2015

Strain Name	RK5267
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: Taxon: K-12 NCBI Taxonomy ID: NCBI Taxon ID: 83333
Genotype	DE(argF-lac)169 DE(fimB-fimE)632(::IS1) DE(fruK-yeiR)725(fruA25) F- Lambda- [araD139]B/r deoC1 e14- flhD5301 gyrA219 non-9 rbsR22 relA1 rpsL150(strR) narI204::Tn10
Strain Reference	PMID:7047497^[1]
Strain availability
Ancestry	parent:RK4353
Annotated phenotypes
edit table

Annotation ID	not	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension
OMP_AN:284	NOT	OMP:0007248		Relative to:OMP_AN:264 Genotype differences: +other:araD139 +other:delta(argF-lac)169 +other:delta(fimB-fimE)632(::IS1) +other:delta(fruK-yeiR)725(fruA25) +other:delta(lacU169) +other:gyrA +other:narI204::Tn10 +other:non -other:DE(argF-lac)169-other:DE(fimB-fimE)632(::IS1)-other:DE(fruK-yeiR)725(fruA25)-other:gyrA219-other:non-9 Condition differences: no differences	other:H2 atmosphere other:anaerobic medium:LB, 0.2% glucose, KClO3	ECO:0000182	in vitro culture assay evidence	PMID:7047497^[1]	CHEBI:49709 Chlorate
OMP_AN:290		OMP:0005103	decreased enzyme activity	Relative to:OMP_AN:286 Genotype differences: +other:araD139 +other:delta(argF-lac)169 +other:delta(fimB-fimE)632(::IS1) +other:delta(fruK-yeiR)725(fruA25) +other:delta(lacU169) +other:gyrA +other:narI204::Tn10 +other:non -other:DE(argF-lac)169-other:DE(fimB-fimE)632(::IS1)-other:DE(fruK-yeiR)725(fruA25)-other:gyrA219-other:non-9 Condition differences: no differences	medium:MacConkey TMAO, 2.5 g KNO3/liter			PMID:7047497^[1]
edit table

See Help:References for how to manage references in OMPwiki.

↑ ^1.0 ^1.1 ^1.2 Stewart, V & MacGregor, CH (1982) Nitrate reductase in Escherichia coli K-12: involvement of chlC, chlE, and chlG loci. J. Bacteriol. 151 788-99 PubMed OMPwiki page

@@ Line 23: / Line 23: @@
 ||
 *Pangenome: Escherichia coli
-*Taxon: K-12
+*Subspecies and/or strain: Taxon: K-12
-*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
+*NCBI Taxonomy ID: NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
 |-
 !align=left align='left' bgcolor='#CCCCFF' |Genotype
 ||
-*other:F-
+DE(argF-lac)169 DE(fimB-fimE)632(::IS1) DE(fruK-yeiR)725(fruA25) F- Lambda- [araD139]B/r deoC1 e14- flhD5301 gyrA219 non-9 rbsR22 relA1 rpsL150(strR) narI204::Tn10
-*other:Lambda-
-*other:[araD139]B/r
-*other:araD139
-*other:delta(argF-lac)169
-*other:delta(fimB-fimE)632(::IS1)
-*other:delta(fruK-yeiR)725(fruA25)
-*other:delta(lacU169)
-*other:deoC1
-*other:e14-
-*other:flhD5301
-*other:gyrA
-*other:narI204::Tn10
-*other:non
-*other:rbsR22
-*other:relA1
-*other:rpsL150(strR)
 |-
 !align=left align='left' bgcolor='#CCCCFF' |Strain Reference
@@ Line 50: / Line 34: @@
 PMID:7047497
 |-
-!align=left align='left' bgcolor='#CCCCFF' |Source
+!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 ||