Difference between revisions of "OMP ST:788 ! Burkholderia contaminans MS14"

From OMPwiki
(Page creation by DemoMaint)
 
(touch table)
 
(3 intermediate revisions by the same user not shown)
Line 23: Line 23:
 
||
 
||
 
*Pangenome: Burkholderia contaminans
 
*Pangenome: Burkholderia contaminans
−
*Taxon: MS14
+
*Subspecies and/or strain: Taxon: MS14
−
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488447&lvl=3&p=mapview&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock 488447]
+
*NCBI Taxonomy ID: NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=488447&lvl=3&p=mapview&p=has_linkout&p=blast_url&p=genome_blast&lin=f&keep=1&srchmode=1&unlock 488447]
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
Line 47: Line 47:
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
−
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6031.S55774f4fb7ad5&page=6031&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
+
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6031.S55774f4fb7ad5&page=6988&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
 
|}
 
|}
 
<noinclude>
 
<noinclude>
−
<!-- OMP category tags -->[[Category:Strains that need OMP_ST accessions]]
+
<!-- OMP category tags -->
 
</noinclude>
 
</noinclude>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.6031.S55774f4fb7ad5--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.6031.S55774f4fb7ad5--></protect>
Line 67: Line 67:
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N55774f4fbaa9f"  class=" tableEdit OMP_annotation_table dataTable"   
 
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N55774f4fbaa9f"  class=" tableEdit OMP_annotation_table dataTable"   
 
|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
−
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
+
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
|-  
 
|-  
 
|
 
|
Line 100: Line 100:
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  
−
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6031.N55774f4fbaa9f&page=6031&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
+
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6031.N55774f4fbaa9f&page=6988&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
 
|}
 
|}
 
<noinclude>
 
<noinclude>

Latest revision as of 13:25, 6 June 2017

Strain Summary

Strain Name

MS14

Synonyms
Taxon Information
  • Pangenome: Burkholderia contaminans
  • Subspecies and/or strain: Taxon: MS14
  • NCBI Taxonomy ID: NCBI Taxon ID: 488447
Genotype
Strain Reference

PMID:19167363[1]

Strain availability
Ancestry
Annotated phenotypes



Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:89

OMP:0006179

presence of antimicrobial peptide production

Relative to:


Genotype differences:

Nothing to compare


Condition differences:

Nothing to compare

  • other:Indicator fungus-Geotrichum candidum
  • temperature:25 C
  • medium:100 mL PDA
ECO:0000182

in vitro culture assay evidence

PMID:19167363[1]




Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Gu, G et al. (2009) Biosynthesis of an antifungal oligopeptide in Burkholderia contaminans strain MS14. Biochem. Biophys. Res. Commun. 380 328-32 PubMed OMPwiki page