OMP ST:6326 ! Escherichia coli UPEC CFT073

Strain Summary

Strain Name	Escherichia coli UPEC CFT073
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: UPEC NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability	ATCC 700928
Ancestry
Annotated phenotypes
edit table

Phenotype Annotation

Annotation ID	not	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:7515		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium	ECO:0000049	reporter gene assay evidence	PMID:21821749	UniProtKB:A0A0H2VAE3
OMP_AN:7516		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium medium:cPACs (0.1 mg/mL)	ECO:0000049	reporter gene assay evidence	PMID:21821749	UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7517		OMP:0000029	presence of flagellum	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749 PMID:22708802
OMP_AN:7518		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)?	temperature:37C medium:CP (10 mg/mL) medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7519		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749 PMID:25391152
OMP_AN:7520		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7521		OMP:0006100	abolished cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7522		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749 PMID:22708802 PMID:25391152
OMP_AN:7523		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7524		OMP:0006167	abolished cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7525		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3
OMP_AN:7526		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PG (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7527		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGP (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7528		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGRE (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7529		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3
OMP_AN:7530		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGRE (5%)?	temperature:37C medium:>= PGRE (5%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7531		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7532		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7534		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802
OMP_AN:7535		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:30C medium:>= PGRE (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7536		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:30C medium:>= PG (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7537		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: no differences	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7538		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7539		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7540		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7541		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:LB broth	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7543		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:96 well plate temperature:37C medium:LB broth			PMID:25391152
OMP_AN:7544		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	other:96 well plate temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth			PMID:25391152	CHEBI:28487 Reserpine (RES)
OMP_AN:7545		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7543 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	other:96 well plate temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth			PMID:25391152	CHEBI:28821 Piperine (PIP)
OMP_AN:7546		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	other:Polystyrene tubes temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth			PMID:25391152	CHEBI:28821 Piperine (PIP)
OMP_AN:7547		OMP:0007020	increased biofilm formation	Relative to: OMP_AN:7552 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	other:Polystyrene tubes temperature:37C medium:>= RES (0.5 ug/mL) medium:LB broth			PMID:25391152	CHEBI:28487 Reserpine (RES)
OMP_AN:7548		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:25391152	CHEBI:28821 Piperine (PIP)
OMP_AN:7549		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= RES (0.5 ug/mL)?	temperature:37C medium:>= RES (0.5 ug/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:25391152	CHEBI:28487 Reserpine (RES)
OMP_AN:7550		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:25391152	CHEBI:28821 Piperine (PIP)
OMP_AN:7551	NOT	OMP:0005323	altered cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= RES (5 ug/mL)?	temperature:37C medium:>= RES (5 ug/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:25391152	CHEBI:28487 Reserpine (RES)
OMP_AN:7552		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:Polystyrene tubes temperature:37C medium:LB broth			PMID:25391152
OMP_AN:7553		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152
OMP_AN:7554		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152	UniProtKB:A0A0H2V815 motA CHEBI:28821 Piperine (PIP)
OMP_AN:7555		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0005803	motility assay evidence	PMID:25391152	UniProtKB:A0A0H2V9E2 motB CHEBI:28821 Piperine (PIP)
OMP_AN:7556		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152	UniProtKB:A0A0H2VGH0 fimA CHEBI:28821 Piperine (PIP)
OMP_AN:7557		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (0.5 ug/mL)?	temperature:37C medium:>= PIP (0.5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152	UniProtKB:P66797 uvrY CHEBI:28821 Piperine (PIP)
OMP_AN:7558		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152	UniProtKB:A0A0H2VAE3 fliC CHEBI:28821 Piperine (PIP)
OMP_AN:7559		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7553 Genotype differences: no differences Condition differences: medium:>= PIP (5 ug/mL)?	temperature:37C medium:>= PIP (5 ug/mL) medium:LB broth	ECO:0000109	reverse transcription polymerase chain reaction evidence	PMID:25391152	UniProtKB:P62608 papA CHEBI:28821 Piperine (PIP)
edit table

References

See Help:References for how to manage references in OMPwiki.