OMP ST:6326 ! Escherichia coli UPEC CFT073

Strain Summary

Strain Name	Escherichia coli UPEC CFT073
Synonyms
Taxon Information	Pangenome: Escherichia coli Subspecies and/or strain: UPEC NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability	ATCC 700928
Ancestry
Annotated phenotypes
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Phenotype Annotation

Annotation ID	not	OMP ID	OMP term name	Relative phenotype information	Experimental condition	ECO ID	ECO term name	Reference	Annotation Extension	Notes
OMP_AN:7515		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium	ECO:0000049	reporter gene assay evidence	PMID:21821749	UniProtKB:A0A0H2VAE3
OMP_AN:7516		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7515 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	other:p(PfliC)-lux temperature:37C medium:0.4% glucose medium:M9 minimal medium medium:cPACs (0.1 mg/mL)	ECO:0000049	reporter gene assay evidence	PMID:21821749	UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7517		OMP:0000029	presence of flagellum	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749 PMID:22708802
OMP_AN:7518		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:CP (10 mg/mL)?	temperature:37C medium:CP (10 mg/mL) medium:LB broth	ECO:0005033	electron microscopy evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7519		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749
OMP_AN:7520		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7521		OMP:0006100	abolished cell motility by swimming	Relative to: OMP_AN:7519 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7522		OMP:0000067	presence of cell motility by swarming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749 PMID:22708802
OMP_AN:7523		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:cPACs (0.1 mg/mL)?	temperature:37C medium:cPACs (0.1 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
OMP_AN:7524		OMP:0006167	abolished cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= CP (10 mg/mL)?	temperature:37C medium:>= CP (10 mg/mL) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:21821749	NCBI Taxonomy ID:13750 cranberry powder (CP)
OMP_AN:7525		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	other:p(PfliC)-lux temperature:37C medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3
OMP_AN:7526		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PG (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PG (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7527		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGP (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGP (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7528		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7525 Genotype differences: no differences Condition differences: medium:>= PGRE (1%)?	other:p(PfliC)-lux temperature:37C medium:>= PGRE (1%) medium:LB medium	ECO:0000049	reporter gene assay evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7529		OMP:0000253	gene expression phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3
OMP_AN:7530		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGRE (5%)?	temperature:37C medium:>= PGRE (5%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7531		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7532		OMP:0000268	decreased gene expression	Relative to: OMP_AN:7529 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:LB medium	ECO:0000112	western blot evidence	PMID:22708802	UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7534		OMP:0000111	presence of cell motility by swimming	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802
OMP_AN:7535		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:30C medium:>= PGRE (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7536		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:30C medium:>= PG (10%) medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7537		OMP:0007093	decreased cell motility by swimming	Relative to: OMP_AN:7534 Genotype differences: no differences Condition differences: no differences	temperature:30C medium:swimming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7538		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7539		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PG (10%)?	temperature:37C medium:>= PG (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Punicalagin (PG) is found in pomegranate tannins
OMP_AN:7540		OMP:0007092	decreased cell motility by swarming	Relative to: OMP_AN:7522 Genotype differences: no differences Condition differences: medium:>= PGP (10%)?	temperature:37C medium:>= PGP (10%) medium:swarming motility medium	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate fruit powder (PGP) was tested
OMP_AN:7541		OMP:0000215	decreased number of flagella	Relative to: OMP_AN:7517 Genotype differences: no differences Condition differences: medium:>= PGRE (10%)?	temperature:37C medium:>= PGRE (10%) medium:LB broth	ECO:0005803	motility assay evidence	PMID:22708802	NCBI Taxonomy ID:22663 Pomegranate	Pomegranate rind extract (PGRE) was tested
OMP_AN:7543		OMP:0000176	biofilm phenotype	Relative to: Genotype differences: Nothing to compare Condition differences: Nothing to compare	temperature:37C medium:LB broth			PMID:25391152		A 96 well plate was used for biofilm formation
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References

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