Difference between revisions of "OMP ST:6326 ! Escherichia coli UPEC CFT073"

From OMPwiki
(Table edited by Kcunningham via TableEdit)
(Table edited by Kcunningham via TableEdit)
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electron microscopy evidence
 
electron microscopy evidence
 
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PMID:21821749
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*PMID:21821749
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*PMID:22708802
 
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motility assay evidence
 
motility assay evidence
 
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−
PMID:21821749
+
*PMID:21821749
 +
*PMID:22708802
 
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Line 738: Line 740:
 
|
 
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Pomegranate fruit powder (PGP) was tested  
 
Pomegranate fruit powder (PGP) was tested  
 +
|-
 +
|
 +
OMP_AN:7538
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7522
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
 +
|-
 +
|
 +
OMP_AN:7539
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7522
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PG (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PG (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Punicalagin (PG) is found in pomegranate tannins
 +
|-
 +
|
 +
OMP_AN:7540
 +
|
 +
 +
|
 +
OMP:0007092
 +
|
 +
decreased cell motility by swarming
 +
|
 +
Relative to: OMP_AN:7522
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGP (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGP (10%)
 +
*medium:swarming motility medium
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate fruit powder (PGP) was tested
 +
|-
 +
|
 +
OMP_AN:7541
 +
|
 +
 +
|
 +
OMP:0000215
 +
|
 +
decreased number of flagella
 +
|
 +
Relative to: OMP_AN:7517
 +
 +
<hr>Genotype differences:<br>
 +
no differences
 +
<hr>Condition differences:<br>
 +
medium:>= PGRE (10%)?
 +
|
 +
*temperature:37C
 +
*medium:>= PGRE (10%)
 +
*medium:LB broth
 +
|
 +
ECO:0005803
 +
|
 +
motility assay evidence
 +
|
 +
PMID:22708802
 +
|
 +
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
 +
|
 +
Pomegranate rind extract (PGRE) was tested
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Revision as of 12:54, 14 November 2016

Strain Summary

Strain Name

Escherichia coli UPEC CFT073

Synonyms
Taxon Information
  • Pangenome: Escherichia coli
  • Subspecies and/or strain: UPEC
  • NCBI Taxonomy ID: 199310
Genotype
Strain Reference
Strain availability

ATCC 700928

Ancestry
Annotated phenotypes


edit table



Notes

Phenotype Annotation

Annotation ID not OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:7515

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3

OMP_AN:7516

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7515

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:0.4% glucose
  • medium:M9 minimal medium
  • medium:cPACs (0.1 mg/mL)
 ECO:0000049

reporter gene assay evidence

PMID:21821749[1]

UniProtKB:A0A0H2VAE3 CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7517

OMP:0000029

presence of flagellum

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

OMP_AN:7518

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7517

Genotype differences:

no differences

Condition differences:

medium:CP (10 mg/mL)?

  • temperature:37C
  • medium:CP (10 mg/mL)
  • medium:LB broth
 ECO:0005033

electron microscopy evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7519

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

OMP_AN:7520

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7521

OMP:0006100

abolished cell motility by swimming

Relative to: OMP_AN:7519

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7522

OMP:0000067

presence of cell motility by swarming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

OMP_AN:7523

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:cPACs (0.1 mg/mL)?

  • temperature:37C
  • medium:cPACs (0.1 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)

OMP_AN:7524

OMP:0006167

abolished cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= CP (10 mg/mL)?

  • temperature:37C
  • medium:>= CP (10 mg/mL)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:21821749[1]

NCBI Taxonomy ID:13750 cranberry powder (CP)

OMP_AN:7525

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • other:p(PfliC)-lux
  • temperature:37C
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3


OMP_AN:7526

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PG (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PG (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7527

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGP (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGP (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7528

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7525

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (1%)?

  • other:p(PfliC)-lux
  • temperature:37C
  • medium:>= PGRE (1%)
  • medium:LB medium
 ECO:0000049

reporter gene assay evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7529

OMP:0000253

gene expression phenotype

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3

OMP_AN:7530

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (5%)?

  • temperature:37C
  • medium:>= PGRE (5%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7531

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:37C
  • medium:>= PG (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7532

OMP:0000268

decreased gene expression

Relative to: OMP_AN:7529

Genotype differences:

no differences

Condition differences:

medium:>= PGP (10%)?

  • temperature:37C
  • medium:>= PGP (10%)
  • medium:LB medium
 ECO:0000112

western blot evidence

PMID:22708802[2]

UniProtKB:A0A0H2VAE3 NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7534

OMP:0000111

presence of cell motility by swimming

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

OMP_AN:7535

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:30C
  • medium:>= PGRE (10%)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7536

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:30C
  • medium:>= PG (10%)
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7537

OMP:0007093

decreased cell motility by swimming

Relative to: OMP_AN:7534

Genotype differences:

no differences

Condition differences:

no differences

  • temperature:30C
  • medium:swimming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7538

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:37C
  • medium:>= PGRE (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

OMP_AN:7539

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= PG (10%)?

  • temperature:37C
  • medium:>= PG (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Punicalagin (PG) is found in pomegranate tannins

OMP_AN:7540

OMP:0007092

decreased cell motility by swarming

Relative to: OMP_AN:7522

Genotype differences:

no differences

Condition differences:

medium:>= PGP (10%)?

  • temperature:37C
  • medium:>= PGP (10%)
  • medium:swarming motility medium
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate fruit powder (PGP) was tested

OMP_AN:7541

OMP:0000215

decreased number of flagella

Relative to: OMP_AN:7517

Genotype differences:

no differences

Condition differences:

medium:>= PGRE (10%)?

  • temperature:37C
  • medium:>= PGRE (10%)
  • medium:LB broth
 ECO:0005803

motility assay evidence

PMID:22708802[2]

NCBI Taxonomy ID:22663 Pomegranate

Pomegranate rind extract (PGRE) was tested

edit table



Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Hidalgo, G et al. (2011) Inhibition of Escherichia coli CFT073 fliC expression and motility by cranberry materials. Appl. Environ. Microbiol. 77 6852-7 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 Asadishad, B et al. (2012) Pomegranate materials inhibit flagellin gene expression and flagellar-propelled motility of uropathogenic Escherichia coli strain CFT073. FEMS Microbiol. Lett. 334 87-94 PubMed OMPwiki page
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