Difference between revisions of "OMP ST:74826 ! Bacteroides thetaiotaomicron ATCC 29148"

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__TOC__
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==Strain Summary==
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{|  id="B617c513c43d4f"  class=" tableEdit Strain_info_table" 
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Bacteroides thetaiotaomicron ATCC 29148
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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VPI-5482
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:
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8955399
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PMID:
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2722748
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==
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==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O617c513dc3f53"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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|-
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|
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OMP_AN:37607
 +
|
 +
 
 +
|
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OMP:0006024
 +
|
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presence of organic carbon source utilization
 +
|
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Relative to:
 +
 
 +
<hr>Genotype differences:<br>
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Nothing to compare<br/>
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<hr>Condition differences:<br>
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Nothing to compare<br/>
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|
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*temperature:37C
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*medium:0.5% amylopectin
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*medium:defined medium
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|
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ECO:0007082
 +
|
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colony size phenotypic evidence used in manual assertion
 +
|
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PMID:2722748
 +
|
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CHEBI:28057 Amylopectin
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|
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Table 1
 +
|-
 +
|
 +
OMP_AN:37608
 +
|
 +
 
 +
|
 +
OMP:0006024
 +
|
 +
presence of organic carbon source utilization
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:0.5% amylose
 +
*medium:defined medium
 +
|
 +
ECO:0007082
 +
|
 +
colony size phenotypic evidence used in manual assertion
 +
|
 +
PMID:2722748
 +
|
 +
CHEBI:28107 Amylose
 +
|
 +
Table 1
 +
|-
 +
|
 +
OMP_AN:37605
 +
|
 +
 
 +
|
 +
OMP:0007280
 +
|
 +
presence of enzymatic activity
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
ENVO:Cell Extract
 +
|
 +
ECO:0005801
 +
|
 +
enzymatic activity assay evidence used in manual assertion
 +
|
 +
PMID:8955399
 +
|
 +
UniProtKB: G8JZS4 Glucan 1,4-alpha-glucosidase Sus B
 +
|
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Table 2
 +
|-
 +
|
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OMP_AN:37609
 +
|
 +
 
 +
|
 +
OMP:0006024
 +
|
 +
presence of organic carbon source utilization
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:37C
 +
*medium:0.5% pullulan
 +
*medium:defined medium
 +
|
 +
ECO:0007082
 +
|
 +
colony size phenotypic evidence used in manual assertion
 +
|
 +
PMID:2722748
 +
|
 +
CAS:9057-02-7
 +
Pullulan
 +
|
 +
Table 1
 +
|-
 +
|
 +
OMP_AN:37606
 +
|
 +
 
 +
|
 +
OMP:0007280
 +
|
 +
presence of enzymatic activity
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
ENVO:Cell Extract
 +
|
 +
ECO:0005801
 +
|
 +
enzymatic activity assay evidence used in manual assertion
 +
|
 +
PMID:8955399
 +
|
 +
UniProtKB: Q8A1G0 Neopullulanase Sus A
 +
 
 +
|
 +
Table 2
 +
 
 +
|- class="tableEdit_footer"
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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32706.O617c513dc3f53&page=32706&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
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<!--box uid=2ccfb3c7bf1208312f02a69e64bfd9e0.32706.O617c513dc3f53--></protect>
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==Additional Information==
 +
 
 +
 
 +
==Links==
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 +
 
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==References==
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{{RefHelp}}<references/>

Latest revision as of 17:14, 17 November 2021

Strain Summary

Strain Name

Bacteroides thetaiotaomicron ATCC 29148

Synonyms

VPI-5482

Taxon Information


Genotype
Strain Reference

PMID:8955399[1] PMID:2722748[2]

Strain availability
Ancestry



Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:37607

OMP:0006024

presence of organic carbon source utilization

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:0.5% amylopectin
  • medium:defined medium
 ECO:0007082

colony size phenotypic evidence used in manual assertion

PMID:2722748[2]

CHEBI:28057 Amylopectin

Table 1

OMP_AN:37608

OMP:0006024

presence of organic carbon source utilization

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:0.5% amylose
  • medium:defined medium
 ECO:0007082

colony size phenotypic evidence used in manual assertion

PMID:2722748[2]

CHEBI:28107 Amylose

Table 1

OMP_AN:37605

OMP:0007280

presence of enzymatic activity

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

ENVO:Cell Extract

ECO:0005801

enzymatic activity assay evidence used in manual assertion

PMID:8955399[1]

UniProtKB: G8JZS4 Glucan 1,4-alpha-glucosidase Sus B

Table 2

OMP_AN:37609

OMP:0006024

presence of organic carbon source utilization

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37C
  • medium:0.5% pullulan
  • medium:defined medium
 ECO:0007082

colony size phenotypic evidence used in manual assertion

PMID:2722748[2]

CAS:9057-02-7 Pullulan

Table 1

OMP_AN:37606

OMP:0007280

presence of enzymatic activity

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

ENVO:Cell Extract

ECO:0005801

enzymatic activity assay evidence used in manual assertion

PMID:8955399[1]

UniProtKB: Q8A1G0 Neopullulanase Sus A

Table 2

edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 1.2 D'Elia, JN & Salyers, AA (1996) Contribution of a neopullulanase, a pullulanase, and an alpha-glucosidase to growth of Bacteroides thetaiotaomicron on starch. J Bacteriol 178 7173-9 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 Anderson, KL & Salyers, AA (1989) Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron. J Bacteriol 171 3199-204 PubMed OMPwiki page
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