Difference between revisions of "OMP ST:9003 ! Saccharomyces cerevisiae BY4742"

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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
 
||
 
||
−
 
+
ATCC 201389
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
 
||
 
||
−
*Pangenome:  
+
*Pangenome: Saccharomyces cerevisiae
 +
*Subspecies and/or strain: BY4742
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
||
 
||
−
 
+
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
||
 
||
−
 
+
PMID:9483801
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
 
||
 
||
 
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]
 
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]
 +
 +
[https://www.atcc.org/products/all/201389.aspx ATCC]
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
 
||
 
||
−
 
+
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
 
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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*  
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
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|- align='left' bgcolor='#CCCCFF'
 
|- align='left' bgcolor='#CCCCFF'
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
 +
|-
 +
|
 +
OMP_AN:24800
 +
|
 +
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:YPD
 +
|
 +
ECO:0005004
 +
|
 +
cell viability assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24801
 +
|
 +
 +
|
 +
OMP:0006024
 +
|
 +
heterotrophic
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:YPGal
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
 +
|
 +
2% w/v (111mM) galactose
 +
|-
 +
|
 +
OMP_AN:24802
 +
|
 +
 +
|
 +
OMP:0007517
 +
|
 +
presence of growth under high osmolarity
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*medium:YPD
 +
*medium:glucitol (sorbitol) 1.5M
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24803
 +
|
 +
 +
|
 +
OMP:0006039
 +
|
 +
resistant to macrolide
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*medium:YPD
 +
*medium:nystatin (10 uM)
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24804
 +
|
 +
 +
|
 +
OMP:0007517
 +
|
 +
presence of growth under high osmolarity
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*medium:NaCl (1M)
 +
*medium:YPD
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24805
 +
|
 +
 +
|
 +
OMP:0007771
 +
|
 +
presence of population growth at alkaline pH
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*pH:8.0
 +
*medium:YPD
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24806
 +
|
 +
 +
|
 +
OMP:0007773
 +
|
 +
presence of population growth on defined medium
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:synthetic complete medium (SC)
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24807
 +
|
 +
 +
|
 +
OMP:0007773
 +
|
 +
presence of population growth on defined medium
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:synthetic minimal medium + his/leu/ura
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine
 +
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine
 +
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24808
 +
|
 +
 +
|
 +
OMP:0007773
 +
|
 +
presence of population growth on defined medium
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:synthetic complete medium - lysine
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24809
 +
|
 +
 +
|
 +
OMP:0007773
 +
|
 +
presence of population growth on defined medium
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:synthetic complete medium - threonine
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:24810
 +
|
 +
 +
|
 +
OMP:0007773
 +
|
 +
presence of population growth on defined medium
 +
|
 +
Relative to:
 +
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
medium:synthetic complete medium - tryptophan
 +
|
 +
ECO:0000336
 +
|
 +
competitive growth assay evidence
 +
|
 +
PMID:12140549
 +
|
 +
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
 +
|
 +
  
 
|- class="tableEdit_footer"  
 
|- class="tableEdit_footer"  

Latest revision as of 15:12, 5 July 2021

Strain Summary

Strain Name

Saccharomyces cerevisiae BY4742

Synonyms

ATCC 201389

Taxon Information
  • Pangenome: Saccharomyces cerevisiae
  • Subspecies and/or strain: BY4742
Genotype

MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0

Strain Reference

PMID:9483801[1]

Strain availability

Dharmacon

ATCC

Ancestry

ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:24800

OMP:0007460

viable vegetative cell population

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:YPD

ECO:0005004

cell viability assay evidence

PMID:12140549[2]

OMP_AN:24801

OMP:0006024

heterotrophic

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:YPGal

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:28260 galactose

2% w/v (111mM) galactose

OMP_AN:24802

OMP:0007517

presence of growth under high osmolarity

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • medium:YPD
  • medium:glucitol (sorbitol) 1.5M
 ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:30911 glucitol

OMP_AN:24803

OMP:0006039

resistant to macrolide

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • medium:YPD
  • medium:nystatin (10 uM)
 ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:7660 nystatin

OMP_AN:24804

OMP:0007517

presence of growth under high osmolarity

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • medium:NaCl (1M)
  • medium:YPD
 ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:30911 NaCl

OMP_AN:24805

OMP:0007771

presence of population growth at alkaline pH

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:8.0
  • medium:YPD
 ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

OMP_AN:24806

OMP:0007773

presence of population growth on defined medium

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:synthetic complete medium (SC)

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

OMP_AN:24807

OMP:0007773

presence of population growth on defined medium

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:synthetic minimal medium + his/leu/ura

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:15971 L-histidine

CHEBI:15603 L-leucine

CHEBI:17568 uracil

OMP_AN:24808

OMP:0007773

presence of population growth on defined medium

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:synthetic complete medium - lysine

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:26710 L-lysine

OMP_AN:24809

OMP:0007773

presence of population growth on defined medium

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:synthetic complete medium - threonine

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:16857 L-threonine

OMP_AN:24810

OMP:0007773

presence of population growth on defined medium

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare

medium:synthetic complete medium - tryptophan

ECO:0000336

competitive growth assay evidence

PMID:12140549[2]

CHEBI:16828 L-tryptophan


edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Brachmann, CB et al. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14 115-32 PubMed OMPwiki page
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 Giaever, G et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418 387-91 PubMed OMPwiki page
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