Difference between revisions of "OMP ST:5450 ! Schizosaccharomyces pombe asp1delta"

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!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
!align=left align='left' bgcolor='#CCCCFF' |Genotype
 
||
 
||
−
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32asp1delta
+
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 asp1delta
 
|-
 
|-
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
 
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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******************************************************************************************
 
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*  
 
*  
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
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OMP:0007460
 
OMP:0007460
 
|
 
|
−
viable cell
+
viable vegetative cell population
 
|
 
|
 
Relative to: OMP_AN:1028
 
Relative to: OMP_AN:1028
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32asp1delta -leu1-32/leu1-32 -h+/h+
+
+asp1delta -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
:?
 +
temperature:?25-32C
 
|
 
|
  
Line 107: Line 108:
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32asp1delta -leu1-32/leu1-32 -h+/h+
+
+asp1delta -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
medium:YES?
 
|
 
|
−
 
+
*temperature:25-32C
 +
*medium:YES
 
|
 
|
−
 
+
ECO:0001098
 
|
 
|
−
 
+
microscopy evidence
 
|
 
|
 
PMID:23697806
 
PMID:23697806
 
|
 
|
−
 
+
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 
|
 
|
 
   
 
   
Line 135: Line 138:
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32asp1delta -leu1-32/leu1-32 -h+/h+
+
+asp1delta -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
medium:YES?
 +
|
 +
*medium:YES
 +
*temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19124
 +
|
 +
 
 +
|
 +
OMP:0007708
 +
|
 +
altered vegetative cell shape
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*medium:YES
 +
*temperature:25-32C
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000003 low
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:19340
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 
|
 
|
 +
Relative to: OMP_AN:1028
  
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:YES?
 +
|
 +
*temperature:25-32C
 +
*medium:YES
 
|
 
|
 
ECO:0001098
 
ECO:0001098
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|-  
 
|-  
 
|
 
|
−
OMP_AN:19124
+
OMP_AN:22669
 +
|
 +
 
 +
|
 +
OMP:0007771
 +
|
 +
presence of population growth at alkaline pH
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22670
 
|
 
|
  
Line 163: Line 257:
  
 
<hr>Genotype differences:<br>
 
<hr>Genotype differences:<br>
−
+leu1-32/leu1-32asp1delta -leu1-32/leu1-32 -h+/h+
+
+asp1delta -h+/h+
 
<hr>Condition differences:<br>
 
<hr>Condition differences:<br>
−
no differences
+
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
has_penetrance: FYPO_EXT:0000001 high
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:22671
 
|
 
|
  
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 +
<hr>Genotype differences:<br>
 +
+asp1delta  -h+/h+
 +
<hr>Condition differences:<br>
 +
temperature:above ~32 degrees Celsius25-32C
 +
medium:YES?
 +
|
 +
*temperature:above ~32 degrees Celsius
 +
*medium:YES
 
|
 
|
 
ECO:0001098
 
ECO:0001098
Line 175: Line 301:
 
PMID:23697806
 
PMID:23697806
 
|
 
|
−
 
+
has_penetrance: FYPO_EXT:0000001 high
 
|
 
|
 
   
 
   

Latest revision as of 16:10, 5 July 2021

Strain Summary

Strain Name

Schizosaccharomyces pombe asp1delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: asp1delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 asp1delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


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Notes

Phenotype Annotation

Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:6669

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

OMP_AN:12412

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • temperature:25-32C
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:18604

NOT

OMP:0007713

altered vegetative cell size

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • medium:YES
  • temperature:25-32C
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:19124

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • medium:YES
  • temperature:25-32C
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000003 low has_penetrance: FYPO_EXT:0000001 high

OMP_AN:19340

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

medium:YES?

  • temperature:25-32C
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:22669

OMP:0007771

presence of population growth at alkaline pH

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high

OMP_AN:22670

OMP:0007708

altered vegetative cell shape

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high

OMP_AN:22671

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+asp1delta -h+/h+

Condition differences:

temperature:above ~32 degrees Celsius25-32C medium:YES?

  • temperature:above ~32 degrees Celsius
  • medium:YES
 ECO:0001098

microscopy evidence

PMID:23697806[2]

has_penetrance: FYPO_EXT:0000001 high


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Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
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