Difference between revisions of "Sandbox"

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{|   id="P575f0b44a3cc0"  class=" tableEdit Strain_info_table" 
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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BW25113
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Eschericia coli
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*Subspecies and/or strain: K-12
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*NCBI Taxonomy ID: 83333
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514
 +
|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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*other:[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
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*PMID:10829079
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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ancestor:[[OMP ST:174 ! Escherichia coli K-12 W1485]]
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L4fbc20bff3bbc"  class=" tableEdit Phenotype_Table_for_Papers_With_No_PMID" 
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!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
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a mutation or genetic difference within a strain
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*Taxon: A
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*Strain: B
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*Substrain: C
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*NCBI Taxon ID: D
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*Genotype of Reference Strain:
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*Reference Condition:
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a mutation or genetic difference within a strain
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*Taxon: A
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*Strain: B
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*Substrain: C
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*NCBI Taxon ID: D
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*Genotype of Reference Strain:
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*Reference Condition:
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*Experimental Condition: 10 mM aspartate
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Testing things have been moved over to the [http://microbialphenotypes.org/dev development site].
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If this code doesn't work there, then we've got a problem.
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--[[User:DanielRenfro|DanielRenfro]] 21:05, 5 May 2011 (UTC)
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L556f3394a606c"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:50
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OMP:0000017
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|
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presence of endospore formation
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|
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Relative to:
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<hr>Genotype differences:<br>
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Nothing to compare<br/>
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<hr>Condition differences:<br>
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Nothing to compare<br/>
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|
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*temperature:30
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*medium:sporulation medium
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PMID:2842295
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|-
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OMP_AN:51
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OMP:0000035
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malformed pilus
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Relative to:
 +
 
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<hr>Genotype differences:<br>
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Nothing to compare<br/>
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<hr>Condition differences:<br>
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Nothing to compare<br/>
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|
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*temperature:37
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*medium:LB
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PMID:12736
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|-
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OMP_AN:7750
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OMP:0000052
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presence of positive chemotaxis
 +
|
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Relative to:
 +
 
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<hr>Genotype differences:<br>
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Nothing to compare<br/>
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<hr>Condition differences:<br>
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Nothing to compare<br/>
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|
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*pH:pH 7
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*temperature:30C
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*medium:maltose
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*medium:minimal chemotaxis medium
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ECO:0005803
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motility assay evidence
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|
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PMID:5335897
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maltose
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|-
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|
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OMP_AN:27249
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|
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OMP:0000013
 +
|
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decreased endospore formation
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
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*pH:7.0
 +
*temperature:37C
 +
*medium:BHI medium
 +
|
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PMID:2842295
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|-
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OMP_AN:27368
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OMP:0007595
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|
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presence of population growth
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:25C
 +
*medium:lysine agar
 +
|
 +
ECO:0001165
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colony counting evidence used in manual assertion
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|
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PMID:33131545335
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|- class="tableEdit_footer"
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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.11.L556f3394a606c&page=11&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A5e4cce73b8f24"  class=" tableEdit Table_CamposMorphologicalFeatures dataTable" 
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!|Strain!!Gene deletion!!L (CV_L)!!W (CV_W)!!A (CV_A)!!V (CV_V)!!SA (CV_SA)!!P (CV_P)!!SAV (CV_SAV)!!C (CV_C)!!Ar (CV_Ar)!!CV_DR!!NA (CV_NA)!!Morpho-Island
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|-
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JWxxxx
 +
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 +
dedD
 +
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9.96
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(17.54)
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-2.30
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(3.07)
 +
|
 +
8.09
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(12.99)
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 +
5.68
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(10.87)
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6.99
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(11.16)
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22
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hfq*
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Latest revision as of 23:03, 19 February 2020

You can add free text to the wiki.


Strain Name

BW25113

Synonyms
Taxon Information
  • Pangenome: Eschericia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514

Strain Reference
Strain availability

CGSC

Ancestry

ancestor:OMP ST:174 ! Escherichia coli K-12 W1485

Annotated phenotypes


edit table

how do I add italics?


Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:
  • Experimental Condition: 10 mM aspartate


edit table



Testing things have been moved over to the development site. If this code doesn't work there, then we've got a problem. --DanielRenfro 21:05, 5 May 2011 (UTC)


<methodinput> type=create bgcolor = #dddddd labeltext=Create a new Methods page: editintro=MediaWiki: buttonlabel=Create preload=Template:Method width=32 break=no </methodinput>


Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:50

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30
  • medium:sporulation medium

PMID:2842295[2]

OMP_AN:51

OMP:0000035

malformed pilus

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37
  • medium:LB

PMID:12736[3]

OMP_AN:7750

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:pH 7
  • temperature:30C
  • medium:maltose
  • medium:minimal chemotaxis medium
 ECO:0005803

motility assay evidence

PMID:5335897[4]

maltose

OMP_AN:27249

OMP:0000013

decreased endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:7.0
  • temperature:37C
  • medium:BHI medium

PMID:2842295[2]

OMP_AN:27368

OMP:0007595

presence of population growth

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:25C
  • medium:lysine agar
 ECO:0001165

colony counting evidence used in manual assertion

PMID:33131545335[5]


edit table


Strain Gene deletion L (CV_L) W (CV_W) A (CV_A) V (CV_V) SA (CV_SA) P (CV_P) SAV (CV_SAV) C (CV_C) Ar (CV_Ar) CV_DR NA (CV_NA) Morpho-Island

JWxxxx

dedD

9.96 (17.54)

-2.30 (3.07)

8.09 (12.99)

5.68 (10.87)

6.99 (11.16)

22

hfq*


edit table

  1. ↑ Datsenko, KA & Wanner, BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97 6640-5 PubMed OMPwiki page
  2. ↑ 2.0 2.1 Kato, J et al. (1988) Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli. J. Bacteriol. 170 3967-77 PubMed OMPwiki page
  3. ↑ Piggot, PJ & Coote, JG (1976) Genetic aspects of bacterial endospore formation. Bacteriol Rev 40 908-62 PubMed OMPwiki page
  4. ↑ Armstrong, JB et al. (1967) Nonchemotactic mutants of Escherichia coli. J. Bacteriol. 93 390-8 PubMed OMPwiki page
  5. ↑ () PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=Sandbox&oldid=143309"