Difference between revisions of "Sandbox"

From OMPwiki
(Table edited by Siegele via TableEdit)
(Table edited by $2 via TableEdit)
 
(9 intermediate revisions by 2 users not shown)
Line 154: Line 154:
 
******************************************************************************************
 
******************************************************************************************
 
*  
 
*  
−
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
+
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
 
*  
 
*  
 
****************************************************************************************** -->
 
****************************************************************************************** -->
Line 274: Line 274:
  
 
|
 
|
−
PMID:
+
PMID:2842295
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27368
 +
|
 +
 
 +
|
 +
OMP:0007595
 +
|
 +
presence of population growth
 +
|
 +
Relative to:
 +
 
 +
<hr>Genotype differences:<br>
 +
Nothing to compare<br/>
 +
<hr>Condition differences:<br>
 +
Nothing to compare<br/>
 +
|
 +
*temperature:25C
 +
*medium:lysine agar
 +
|
 +
ECO:0001165
 +
|
 +
colony counting evidence used in manual assertion
 +
|
 +
PMID:33131545335
 
|
 
|
  
Line 284: Line 313:
 
|}
 
|}
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.11.L556f3394a606c--></protect>
 
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.11.L556f3394a606c--></protect>
 +
 +
 +
<protect><!--box uid=2ccfb3c7bf1208312f02a69e64bfd9e0.11.A5e4cce73b8f24-->
 +
<!--
 +
******************************************************************************************
 +
*
 +
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 +
*
 +
****************************************************************************************** -->
 +
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A5e4cce73b8f24"  class=" tableEdit Table_CamposMorphologicalFeatures dataTable" 
 +
|- align='left' bgcolor='#CCCCFF'
 +
!|Strain!!Gene deletion!!L (CV_L)!!W (CV_W)!!A (CV_A)!!V (CV_V)!!SA (CV_SA)!!P (CV_P)!!SAV (CV_SAV)!!C (CV_C)!!Ar (CV_Ar)!!CV_DR!!NA (CV_NA)!!Morpho-Island
 +
|-
 +
|
 +
JWxxxx
 +
|
 +
dedD
 +
|
 +
9.96
 +
(17.54)
 +
|
 +
-2.30
 +
(3.07)
 +
|
 +
8.09
 +
(12.99)
 +
|
 +
5.68
 +
(10.87)
 +
|
 +
6.99
 +
(11.16)
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
22
 +
|-
 +
|
 +
hfq*
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
|
 +
 +
 +
|- class="tableEdit_footer"
 +
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.11.A5e4cce73b8f24&page=11&pagename={{FULLPAGENAMEE}}&type=0&template=Table_CamposMorphologicalFeatures edit table]</div> || || || || || || || || || || || || ||
 +
|}
 +
<!--box uid=2ccfb3c7bf1208312f02a69e64bfd9e0.11.A5e4cce73b8f24--></protect>

Latest revision as of 23:03, 19 February 2020

You can add free text to the wiki.


Strain Name

BW25113

Synonyms
Taxon Information
  • Pangenome: Eschericia coli
  • Subspecies and/or strain: K-12
  • NCBI Taxonomy ID: 83333
Genotype

F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514

Strain Reference
Strain availability

CGSC

Ancestry

ancestor:OMP ST:174 ! Escherichia coli K-12 W1485

Annotated phenotypes


edit table

how do I add italics?


Phenotype of Taxon Information Genotype Information (if known) Condition Information OMP ID OMP Term Name ECO ID ECO Term Name Notes Status

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:

a mutation or genetic difference within a strain

  • Taxon: A
  • Strain: B
  • Substrain: C
  • NCBI Taxon ID: D
  • Genotype of Reference Strain:
  • Reference Condition:
  • Experimental Condition: 10 mM aspartate


edit table



Testing things have been moved over to the development site. If this code doesn't work there, then we've got a problem. --DanielRenfro 21:05, 5 May 2011 (UTC)


<methodinput> type=create bgcolor = #dddddd labeltext=Create a new Methods page: editintro=MediaWiki: buttonlabel=Create preload=Template:Method width=32 break=no </methodinput>


Annotation ID Qualifier OMP ID OMP term name Relative phenotype information Experimental condition ECO ID ECO term name Reference Annotation Extension Notes

OMP_AN:50

OMP:0000017

presence of endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:30
  • medium:sporulation medium

PMID:2842295[2]

OMP_AN:51

OMP:0000035

malformed pilus

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:37
  • medium:LB

PMID:12736[3]

OMP_AN:7750

OMP:0000052

presence of positive chemotaxis

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:pH 7
  • temperature:30C
  • medium:maltose
  • medium:minimal chemotaxis medium
 ECO:0005803

motility assay evidence

PMID:5335897[4]

maltose

OMP_AN:27249

OMP:0000013

decreased endospore formation

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • pH:7.0
  • temperature:37C
  • medium:BHI medium

PMID:2842295[2]

OMP_AN:27368

OMP:0007595

presence of population growth

Relative to:

Genotype differences:

Nothing to compare

Condition differences:

Nothing to compare
  • temperature:25C
  • medium:lysine agar
 ECO:0001165

colony counting evidence used in manual assertion

PMID:33131545335[5]


edit table


Strain Gene deletion L (CV_L) W (CV_W) A (CV_A) V (CV_V) SA (CV_SA) P (CV_P) SAV (CV_SAV) C (CV_C) Ar (CV_Ar) CV_DR NA (CV_NA) Morpho-Island

JWxxxx

dedD

9.96 (17.54)

-2.30 (3.07)

8.09 (12.99)

5.68 (10.87)

6.99 (11.16)

22

hfq*


edit table

  1. ↑ Datsenko, KA & Wanner, BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 97 6640-5 PubMed OMPwiki page
  2. ↑ 2.0 2.1 Kato, J et al. (1988) Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli. J. Bacteriol. 170 3967-77 PubMed OMPwiki page
  3. ↑ Piggot, PJ & Coote, JG (1976) Genetic aspects of bacterial endospore formation. Bacteriol Rev 40 908-62 PubMed OMPwiki page
  4. ↑ Armstrong, JB et al. (1967) Nonchemotactic mutants of Escherichia coli. J. Bacteriol. 93 390-8 PubMed OMPwiki page
  5. ↑ () PubMed OMPwiki page
Retrieved from "https://microbialphenotypes.org/wiki/index.php?title=Sandbox&oldid=143309"