Difference between revisions of "OMP ST:3285 ! Schizosaccharomyces pombe ppk16delta"

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==Strain Summary==
 
==Strain Summary==
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{|  id="W57e0072d27cf0"  class=" tableEdit Strain_info_table" 
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Schizosaccharomyces pombe ppk16delta
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Schizosaccharomyces pombe
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*Subspecies and/or strain: ppk16delta
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*NCBI Taxonomy ID:4896
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32ppk16delta
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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PMID:20473289
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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http://us.bioneer.com/products/spombe/spombeoverview.aspx
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|-
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Phenotype Annotation==
 
==Phenotype Annotation==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G57e0072d29927"  class=" tableEdit OMP_annotation_table dataTable" 
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:3912
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|
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 +
|
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OMP:0007460
 +
|
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viable cell
 +
|
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Relative to: OMP_AN:1028
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<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32ppk16delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
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temperature:?25-32C
 +
|
 +
 
 +
|
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 +
|
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 +
|
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PMID:20473289
 +
|
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 +
|
 +
 +
|-
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|
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OMP_AN:10269
 +
|
 +
 
 +
|
 +
OMP:0007460
 +
|
 +
viable vegetative cell population
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32ppk16delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
 
 +
|
 +
 
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:16565
 +
|
 +
NOT
 +
|
 +
OMP:0007715
 +
|
 +
altered vegetative cell morphology
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32ppk16delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:20589
 +
|
 +
 
 +
|
 +
OMP:0007716
 +
|
 +
viable vegetative cell
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32ppk16delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
:?
 +
temperature:?25-32C
 +
|
 +
 
 +
|
 +
ECO:0001098
 +
|
 +
microscopy evidence
 +
|
 +
PMID:23697806
 +
|
 +
 
 +
|
 +
 +
|-
 +
|
 +
OMP_AN:27158
 +
|
 +
 
 +
|
 +
OMP:0007806
 +
|
 +
increased cell population viability upon nitrogen starvation
 +
|
 +
Relative to: OMP_AN:1028
 +
 
 +
<hr>Genotype differences:<br>
 +
+leu1-32/leu1-32ppk16delta  -leu1-32/leu1-32 -h+/h+
 +
<hr>Condition differences:<br>
 +
medium:glucose MM, no nitrogen;agar plates?
 +
|
 +
*temperature:25-32C
 +
*medium:glucose MM, no nitrogen
 +
*medium:agar plates
 +
|
 +
ECO:0001563
 +
|
 +
cell growth assay evidence
 +
|
 +
PMID:25452419
 +
|
 +
 
 +
|
 +
 +
 
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Latest revision as of 15:47, 20 June 2018

Strain Summary

Strain Name

Schizosaccharomyces pombe ppk16delta

Synonyms
Taxon Information
  • Pangenome: Schizosaccharomyces pombe
  • Subspecies and/or strain: ppk16delta
  • NCBI Taxonomy ID:4896
Genotype

ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32ppk16delta

Strain Reference

PMID:20473289[1]

Strain availability

http://us.bioneer.com/products/spombe/spombeoverview.aspx

Ancestry

parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286

Annotated phenotypes


edit table


Notes

Phenotype Annotation

Showing 1 to 5 of 5 entries
Annotation IDQualifierOMP IDOMP term nameRelative phenotype informationExperimental conditionECO IDECO term nameReferenceAnnotation ExtensionNotes

OMP_AN:10269

OMP:0007460

viable vegetative cell population

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32ppk16delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:23697806[2]

OMP_AN:16565

NOT

OMP:0007715

altered vegetative cell morphology

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32ppk16delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:20589

OMP:0007716

viable vegetative cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32ppk16delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

ECO:0001098

microscopy evidence

PMID:23697806[2]

OMP_AN:27158

OMP:0007806

increased cell population viability upon nitrogen starvation

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32ppk16delta -leu1-32/leu1-32 -h+/h+

Condition differences:

medium:glucose MM, no nitrogen;agar plates?

  • temperature:25-32C
  • medium:glucose MM, no nitrogen
  • medium:agar plates
 ECO:0001563

cell growth assay evidence

PMID:25452419[3]


OMP_AN:3912

OMP:0007460

viable cell

Relative to: OMP_AN:1028

Genotype differences:

+leu1-32/leu1-32ppk16delta -leu1-32/leu1-32 -h+/h+

Condition differences:
?

temperature:?25-32C

PMID:20473289[1]

Showing 1 to 5 of 5 entries
edit table


Additional Information

Links

References

See Help:References for how to manage references in OMPwiki.

  1. ↑ Jump up to: 1.0 1.1 Kim, DU et al. (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 28 617-623 PubMed OMPwiki page
  2. ↑ Jump up to: 2.0 2.1 2.2 Hayles, J et al. (2013) A genome-wide resource of cell cycle and cell shape genes of fission yeast. Open Biol 3 130053 PubMed OMPwiki page
  3. Jump up ↑ Sideri, T et al. (2014) Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5 145-55 PubMed OMPwiki page
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