Siegele: Created page with "In modern biology, the pangenome is the entire set of genes for all strains within a clade.[ref needed] Each set of orthologous genes found among the genomes included in the p..."

2019-09-26T07:11:41Z

Created page with "In modern biology, the pangenome is the entire set of genes for all strains within a clade.[ref needed] Each set of orthologous genes found among the genomes included in the p..."

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In modern biology, the pangenome is the entire set of genes for all strains within a clade.[ref needed] Each set of orthologous genes found among the genomes included in the pangenome represents a pangene.

In the near feature, the OMP project will associate annotated phenotypes not only with a particular genotype but also with a particular pangene(s). Meanwhile, an excel spreadsheet can be downloaded from our [https://github.com/microbialphenotypes/Ortholog-Clusters-for-Pangenomes/blob/master/Ecoli_ClustersOfOrthologousProteins.xlsx github repository], that lists the cluster numbers and the ortholog members identified by gene_locus_ids for 36 strains of ''Escherichia coli'' and ''Shigella''

Details of the workflow used to define the clusters of orthologous proteins will be available soon.

Pangenomes and pangenes - Revision history

Siegele: Created page with "In modern biology, the pangenome is the entire set of genes for all strains within a clade.[ref needed] Each set of orthologous genes found among the genomes included in the p..."