PMID Table Mock-up - Revision history

Azweifel: Table edited by Azweifel via TableEdit

2011-08-26T16:15:17Z

Table edited by Azweifel via TableEdit

← Older revision		Revision as of 16:15, 26 August 2011
Line 67:		Line 67:
	lethality		lethality
	\|		\|
	ECO:~~0000001~~		ECO:000000
	\|		\|
	inability to construct this strain		inability to construct this strain
	\|		\|
	Example 3		Example 3- we need to capture the "synthetic lethal"
	\|		\|
	complete		complete
Line 83:		Line 83:
	*NCBI Taxon ID: 511145		*NCBI Taxon ID: 511145
	\|		\|
	*Genotype of Reference Strain: ~~parE~~ (ts)		*Genotype of Reference Strain: parE10 (ts)
	*Genotype of Experimental Strain : parE(ts), dnaX expressed at high copy		*Genotype of Experimental Strain : parE(ts), dnaX expressed at high copy
	\|		\|
	*Reference Condition: at ~~permissive~~ temperature		*Reference Condition: at restrictive temperature
	*Experimental Condition: at restrictive temperature		*Experimental Condition: at restrictive temperature
	\|		\|
	OMP:~~0000003~~		OMP:000000
	\|		\|
	partial suppression of phenotype		partial suppression of phenotype
	\|		\|
	ECO:~~0000003~~		ECO:000000
	\|		\|
	high copy suppressor screen		high copy suppressor screen
Line 161:		Line 161:
	*Genotype of Experimental Strain : parE10		*Genotype of Experimental Strain : parE10
	\|		\|
	*Reference ~~Condition: at permissive temperature~~		*Reference Condition: at restrictive temperature
	*Experimental Condition: at restrictive temperature
	\|		\|
	OMP: 000000		OMP: 000000
Line 196:		Line 195:
	transport assay		transport assay
	\|		\|
	Example 6 (Phage # 81)- "Expression of ''mdtEF is up-regulated more than 20-fold by the anaerobic global regulator ArcA, resulting in increased efflux activity and enhanced drug tolerance in anaerobically grown "'E.coli'' cells."		Example 6 (Phage # 81)- "Expression of ''mdtEF'' is up-regulated more than 20-fold by the anaerobic global regulator ArcA, resulting in increased efflux activity and enhanced drug tolerance in anaerobically grown "'E.coli'' cells."
	\|		\|
	complete		complete

Azweifel: Table edited by Azweifel via TableEdit

2011-08-26T14:43:28Z

Table edited by Azweifel via TableEdit

@@ Line 46: / Line 46: @@
 plating dilutions
+|
+Example 4
+|
 complete
@@ Line 71: / Line 71: @@
 inability to construct this strain
+|
+Example 3
+|
 complete
@@ Line 84: / Line 84: @@
+|
 *Genotype of Reference Strain: parE (ts)
-*Genotype of Experimental Strain : parE(ts) dnaX expressed at high copy
+*Genotype of Experimental Strain : parE(ts), dnaX expressed at high copy
+|
-*Reference Condition:
+*Reference Condition: at permissive temperature
+|
 OMP:0000003
+|
-suppression of phenotype
+partial suppression of phenotype
+|
 ECO:0000003
@@ Line 97: / Line 97: @@
 high copy suppressor screen
+|
+Example 2- need a place for "temperature-sensitive" and another box will drop so user can fill in the phenotype description in OMP terms.
+|
 complete
@@ Line 138: / Line 138: @@
 *Experimental Condition: stationary phase culture in rich medium
+|
-OMP: 0000005
+OMP: 000000
+|
-round cell shape
+shortening of cell length
+|
 ECO:0000004
@@ Line 146: / Line 146: @@
 microscopy
+|
+trying to get at the rod to round transition ''E.coli'' makes when going from exponential to stationary phase.
+|
 complete

Azweifel: Table edited by Azweifel via TableEdit

2011-08-26T14:20:55Z

Table edited by Azweifel via TableEdit

← Older revision		Revision as of 14:20, 26 August 2011
Line 38:		Line 38:
	*Experimental Condition: culture in stationary phase		*Experimental Condition: culture in stationary phase
	\|		\|
	OMP: 0000001		OMP:0000001
	\|		\|
	decreased antibiotic resistance		decreased antibiotic resistance
Line 88:		Line 88:
	*Reference Condition:		*Reference Condition:
	\|		\|
	OMP: 0000003		OMP:0000003
			OMP:
	\|		\|
	suppression of phenotype		suppression of phenotype

Azweifel: Table edited by Azweifel via TableEdit

2011-08-19T19:30:56Z

Table edited by Azweifel via TableEdit

@@ Line 95: / Line 95: @@
+|
 high copy suppressor screen
+|

Azweifel at 19:27, 19 August 2011

2011-08-19T19:27:44Z

Show changes

Azweifel: Table edited by Azweifel via TableEdit

2011-08-19T19:27:01Z

Table edited by Azweifel via TableEdit

@@ Line 147: / Line 147: @@
 {|   id="G4e4e87bf879db"  class=" tableEdit Phenotype_Table_2"
 |-
-!|Taxon Information!!Genotype Information (if known)!!OMP ID!!OMP Term Name!!Growth Details!!ECO ID!!ECO Term Name!!Notes!!Status
+!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
 |- class="tableEdit_footer"
-|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.2146.G4e4e87bf879db&page=2146&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</span> || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.2146.G4e4e87bf879db&page=2146&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</span> || || || || || || || || ||
 |}
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Azweifel: /* Phenotype Annotations */

2011-08-19T15:56:47Z

Phenotype Annotations

← Older revision		Revision as of 15:56, 19 August 2011
Line 136:		Line 136:
	\|}		\|}
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			<!--
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			* PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table.
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			{\| id="G4e4e87bf879db" class=" tableEdit Phenotype_Table_2"
			\|-
			!\|Taxon Information!!Genotype Information (if known)!!OMP ID!!OMP Term Name!!Growth Details!!ECO ID!!ECO Term Name!!Notes!!Status

			\|- class="tableEdit_footer"
			\|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.2146.G4e4e87bf879db&page=2146&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</span> \|\| \|\| \|\| \|\| \|\| \|\| \|\| \|\|
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Siegele: Table edited by Siegele via TableEdit

2011-07-08T16:17:49Z

Table edited by Siegele via TableEdit

← Older revision		Revision as of 16:17, 8 July 2011
Line 33:		Line 33:
	*NCBI Taxon ID: 511145		*NCBI Taxon ID: 511145
	\|		\|
	*Genotype of Parent: Lam-rph- F-		*Genotype of Parent: Lam- rph- F-
	*Genetic Difference of Mutant : lacZ-		*Genetic Difference of Mutant : lacZ-
	\|		\|

Azweifel: Table edited by Azweifel via TableEdit

2011-07-08T16:09:39Z

Table edited by Azweifel via TableEdit

← Older revision		Revision as of 16:09, 8 July 2011
Line 38:		Line 38:
	OMP: 0000002		OMP: 0000002
	\|		\|
	~~absent~~ utilization of carbon source		loss of utilization of carbon source
	\|		\|
	chemical:lactose		chemical:lactose

Azweifel: Table edited by Azweifel via TableEdit

2011-06-30T15:51:14Z

Table edited by Azweifel via TableEdit

← Older revision		Revision as of 15:51, 30 June 2011
Line 23:		Line 23:
	{\| id="H4dfa55081758a" class=" tableEdit PMID_Relative_Phenotype_table"		{\| id="H4dfa55081758a" class=" tableEdit PMID_Relative_Phenotype_table"
	\|-		\|-
	!\|OMP Accession!!Taxon Information!!Genotype Information (if known)!!OMP ID!!OMP Term Name!!~~Additional~~ Phenotype ~~Information~~!!Related Rows!!ECO ID!!ECO Term Name!!Notes!!Status		!\|OMP Accession!!Taxon Information!!Genotype Information (if known)!!OMP ID!!OMP Term Name!!Phenotype Details!!Related Rows!!ECO ID!!ECO Term Name!!Notes!!Status
	\|-		\|-
	\|		\|
Line 69:		Line 69:
	temperature sensitive:37C		temperature sensitive:37C
	\|		\|
	complex phenotype:~~OMP~~ 3		complex phenotype:3
	\|		\|
	ECO:0000002		ECO:0000002
Line 122:		Line 122:
	temperature sensitive:37C		temperature sensitive:37C
	\|		\|
	complex phenotype:~~OMP~~ 3		complex phenotype:3
	\|		\|
	ECO:0000002		ECO:0000002