127.0.0.1: update ECO:0000224_!_SOLiD_sequencing_evidence page

2017-12-04T08:00:49Z

update ECO:0000224_!_SOLiD_sequencing_evidence page

127.0.0.1: Add page for ECO:0000224_!_SOLiD_sequencing_evidence

2013-03-05T20:52:12Z

Add page for ECO:0000224_!_SOLiD_sequencing_evidence

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{{Autobox|1='''id:''' ECO:0000224 
'''name:''' SOLiD sequencing evidence 
'''def:''' "A high throughput nucleotide sequencing result derived by SOLiD sequencing technology." [ECO:MCC, OBI:0000706] 
'''is_a:''' [[:Category:ECO:0000221 ! high throughput nucleotide sequencing assay evidence|ECO:0000221 ! high throughput nucleotide sequencing assay evidence]][[Category:ECO:0000221 ! high throughput nucleotide sequencing assay evidence|ECO:0000221 ! high throughput nucleotide sequencing assay evidence]] 
'''comment:''' SOLiD sequencing technology is based on sequencing by ligation. After library preparation, emulsion PCR and bead enrichment are performed, including 3' modification of templates on selected beads to allow covalent bonding to a slide. 3' modified beads are attached to a glass slide and primers are added. Four fluorescently labeled di-base probes are added and multiple cycles of ligation, detection and cleavage are performed. The number of cycles determines read length. After a number of ligation cycles, the extension product is removed and another round of ligation cycles is performed with a new primer complimentary to the n-1 position of the template. Five rounds of primer reset are performed for each sequence tag. 
}}
== Usage Notes ==

==References ==
{{RefHelp}}
<references/>

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 {{Autobox|1='''id:''' ECO:0000224<br>
 '''name:''' SOLiD sequencing evidence<br>
-'''def:''' "A high throughput nucleotide sequencing result derived by SOLiD sequencing technology." [ECO:MCC, OBI:0000706]<br>
+'''def:''' "A type of high throughput nucleotide sequencing evidence in which sequence is determined through rounds of ligation-based sequencing with fluorescently-labeled Di-base probes and cleavage, after which the template is reset, with a primer offset by one base, for subsequent rounds of ligation." [OBI:0000706]<br>
 '''is_a:''' [[:Category:ECO:0000221 ! high throughput nucleotide sequencing assay evidence|ECO:0000221 ! high throughput nucleotide sequencing assay evidence]][[Category:ECO:0000221 ! high throughput nucleotide sequencing assay evidence|ECO:0000221 ! high throughput nucleotide sequencing assay evidence]]<br>
-'''comment:''' SOLiD sequencing technology is based on sequencing by ligation. After library preparation, emulsion PCR and bead enrichment are performed, including 3' modification of templates on selected beads to allow covalent bonding to a slide. 3' modified beads are attached to a glass slide and primers are added. Four fluorescently labeled di-base probes are added and multiple cycles of ligation, detection and cleavage are performed. The number of cycles determines read length. After a number of ligation cycles, the extension product is removed and another round of ligation cycles is performed with a new primer complimentary to the n-1 position of the template. Five rounds of primer reset are performed for each sequence tag.<br>
+'''comment:''' SOLiD sequencing technology is based on sequencing by ligation. After library preparation, emulsion PCR and bead enrichment are performed, including 3' modification of templates on selected beads to allow covalent bonding to a slide. 3' modified beads are attached to a glass slide and primers are added. Four fluorescently labeled di-base probes are added and multiple cycles of ligation, detection and cleavage are performed. The number of cycles determines read length. After a number of ligation cycles, the extension product is removed and another round of ligation cycles is performed with a new primer complimentary to the n-1 position of the template. Five rounds of primer reset are performed for each sequence tag.\n\nSamples are prepared by fragmentation of a sample library, adaptor ligation, emulsion PCR, and attachment of resultant beads to glass slides.<br>
 }}
 == Usage Notes ==

Category:ECO:0000224 ! SOLiD sequencing evidence - Revision history

127.0.0.1: update ECO:0000224_!_SOLiD_sequencing_evidence page

127.0.0.1: Add page for ECO:0000224_!_SOLiD_sequencing_evidence