View source for OMP ST:74244 ! Escherichia coli K-12 JW5327

__TOC__

==Strain Summary==
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.31538.W5b5108ef85773-->
<!--
******************************************************************************************
* 
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ** 
* 
****************************************************************************************** -->
{|   id="W5b5108ef85773"  class=" tableEdit Strain_info_table"  

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5327
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW5327-3
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 yeeP767(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=115939 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=115939 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||


|- class="tableEdit_footer" 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.31538.W5b5108ef85773&page=31538&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.31538.W5b5108ef85773--></protect>


==Notes==


==Phenotype Annotation==
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.31538.C5b5108ef867c2-->
<!--
******************************************************************************************
* 
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ** 
* 
****************************************************************************************** -->
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C5b5108ef867c2"  class=" tableEdit OMP_annotation_table dataTable"  
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|- 
|
OMP_AN:36002
|

|
OMP:0007953
|
increased population growth at high temperature
|
Relative to: OMP_AN:27621

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>

*temperature:40C
*medium37C
*medium
|

*temperature:40C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 40 C
*normalized fitness= 5.56 
|- 
|
OMP_AN:36003
|

|
OMP:0007174
|
increased resistance to a host defense peptide
|
Relative to: OMP_AN:27563

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|

*chemical concentration= 0.1 ug/ml
*normalized fitness= 5.25 
|- 
|
OMP_AN:36004
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27574

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|

*chemical concentration=  5 uM
*normalized fitness= 4.03 
|- 
|
OMP_AN:36005
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27597

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|

*chemical concentration=  10 uM
*normalized fitness= 4 
|- 
|
OMP_AN:36006
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27532

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|

*chemical concentration=  0.04 ug/ml
*normalized fitness= 4.55 
|- 
|
OMP_AN:36007
|

|
OMP:0006041
|
increased resistance to quinolone
|
Relative to: OMP_AN:27541

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|

*chemical concentration=  1.5 ug/ml
*normalized fitness= 3.52 
|- 
|
OMP_AN:36008
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27538

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|

*chemical concentration=  5 ug/ml
*normalized fitness= 3.41 
|- 
|
OMP_AN:36009
|

|
OMP:0006037
|
increased resistance to macrolide
|
Relative to: OMP_AN:27521

<hr>Genotype differences:<br>
+lacZ4787(del)( +yeeP767(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|

*chemical concentration=  20 ug/ml
*normalized fitness= 3.41 

|- class="tableEdit_footer" 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.31538.C5b5108ef867c2&page=31538&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.31538.C5b5108ef867c2--></protect>


==Additional Information==


==Links==


==References==
{{RefHelp}}<references/>