View source for OMP ST:73731 ! Escherichia coli K-12 JW3935

__TOC__

==Strain Summary==
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.31025.L5b510841db44c-->
<!--
******************************************************************************************
* 
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ** 
* 
****************************************************************************************** -->
{|   id="L5b510841db44c"  class=" tableEdit Strain_info_table"  

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW3935
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW3935-4
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 fabR751(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=109121 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=109121 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||


|- class="tableEdit_footer" 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.31025.L5b510841db44c&page=31025&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.31025.L5b510841db44c--></protect>


==Notes==


==Phenotype Annotation==
<protect><!--box uid=d41d8cd98f00b204e9800998ecf8427e.31025.A5b510841dc51d-->
<!--
******************************************************************************************
* 
** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ** 
* 
****************************************************************************************** -->
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A5b510841dc51d"  class=" tableEdit OMP_annotation_table dataTable"  
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|- 
|
OMP_AN:34765
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= 3.76 
|- 
|
OMP_AN:34766
|

|
OMP:0007071
|
increased organic carbon source utilization
|
Relative to: OMP_AN:27611

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= 3.76 
|- 
|
OMP_AN:34767
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27556

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|

*chemical concentration= 1 ug/ml
*normalized fitness= 3.78 
|- 
|
OMP_AN:34768
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27549

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|

*chemical concentration=  0.075 ug/ml
*normalized fitness= -4.5 
|- 
|
OMP_AN:34769
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27534

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|

*chemical concentration= 0.25 ug/ml
*normalized fitness= 4.25 
|- 
|
OMP_AN:34770
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27501

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|

*chemical concentration=  1.2 mM
*normalized fitness= 4.39 
|- 
|
OMP_AN:34771
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= 3.94 
|- 
|
OMP_AN:34772
|

|
OMP:0007071
|
increased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= 3.94 
|- 
|
OMP_AN:34773
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27537

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration=  0.06 ug/ml
*normalized fitness= -3.88 
|- 
|
OMP_AN:34774
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27551

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|

*chemical concentration=  2 ug/ml
*normalized fitness= -3.73 
|- 
|
OMP_AN:34775
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabR751(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924)  + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924)  + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= 5.02 

|- class="tableEdit_footer" 
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.31025.A5b510841dc51d&page=31025&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<!--box uid=d41d8cd98f00b204e9800998ecf8427e.31025.A5b510841dc51d--></protect>


==Additional Information==


==Links==


==References==
{{RefHelp}}<references/>