View source for OMP ST:71926 ! Escherichia coli K-12 JW1116

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW1116
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW1116-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 phoP790(del)::FRT-kan-FRT
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=107328 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc2.biology.yale.edu/Strain.php?ID=107328 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:29768
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OMP:0007903
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decreased resistance to bile acids
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Relative to: OMP_AN:27586

<hr>Genotype differences:<br>
+lacZ4787(del)( +phoP790(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:9177) Deoxycholate sodium
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*chemical concentration=  2 %
*normalized fitness= -3.63 
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OMP_AN:29769
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OMP:0006040
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decreased resistance to quinolone
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Relative to: OMP_AN:27541

<hr>Genotype differences:<br>
+lacZ4787(del)( +phoP790(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:3864541) Nalidixic acid sodium salt
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*chemical concentration=  2 ug/ml
*normalized fitness= -6.25 
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OMP_AN:29770
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OMP:0007008
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decreased population growth at acidic pH
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Relative to: OMP_AN:27622

<hr>Genotype differences:<br>
+lacZ4787(del)( +phoP790(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
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*chemical concentration= pH 4 
*normalized fitness= -5.14 
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OMP_AN:29771
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OMP:0007878
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increased resistance to an antimicrobial agent
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Relative to: OMP_AN:27565

<hr>Genotype differences:<br>
+lacZ4787(del)( +phoP790(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:8310) Polymyxin B sulfate
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*chemical concentration=  6 ug/ml
*normalized fitness= 4.01 
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OMP_AN:29772
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OMP:0007879
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decreased resistance to an antimicrobial agent
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Relative to: OMP_AN:27500

<hr>Genotype differences:<br>
+lacZ4787(del)( +phoP790(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Trimethoprim
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:45924) Trimethoprim
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*chemical concentration=  0.3 ug/ml
*normalized fitness= -3.68 

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==Additional Information==


==Links==


==References==
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