View source for OMP ST:71917 ! Escherichia coli K-12 JW1106

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW1106
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW1106-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 cobB779(del)::FRT-kan-FRT
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=107320 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc2.biology.yale.edu/Strain.php?ID=107320 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:29741
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OMP:0007075
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decreased growth factor requirement
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Relative to: OMP_AN:27601

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:32954) Sodium Acetate anhydrous
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*chemical concentration= 0.6%
*normalized fitness= -5.31 
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OMP_AN:29742
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OMP:0007070
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decreased organic carbon source utilization
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Relative to: OMP_AN:27611

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:32954) Sodium Acetate anhydrous
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*chemical concentration= 0.6%
*normalized fitness= -5.31 
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OMP_AN:29743
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OMP:0007879
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decreased resistance to an antimicrobial agent
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Relative to: OMP_AN:27552

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:10110) Azidothymidine
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*chemical concentration=  2.5 ng/ml
*normalized fitness= -3.57 
|- 
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OMP_AN:29744
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OMP:0006045
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increased resistance to beta-lactam compound
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Relative to: OMP_AN:27534

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:3501) Cefoxitin sodium hydrate
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*chemical concentration=  0.75 ug/ml
*normalized fitness= 3.72 
|- 
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OMP_AN:29745
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OMP:0007878
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increased resistance to an antimicrobial agent
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Relative to: OMP_AN:27546

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:8653) Pyocyanin
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*chemical concentration= 0.2 ug/ml
*normalized fitness= 3.42 
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OMP_AN:29746
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OMP:0007250
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increased resistance to a chemical
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Relative to: OMP_AN:27568

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:53188) (±)-Verapamil hydrochloride
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*chemical concentration= 0.1 mM
*normalized fitness= 3.45 
|- 
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OMP_AN:29747
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OMP:0006044
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decreased resistance to beta-lactam
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Relative to: OMP_AN:27536

<hr>Genotype differences:<br>
+lacZ4787(del)( +cobB779(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:3509) Ceftazidime hydrate
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*chemical concentration=  0.075 ug/ml
*normalized fitness= -3.46 

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==Additional Information==


==Links==


==References==
{{RefHelp}}<references/>