View source for OMP ST:71848 ! Escherichia coli K-12 JW0980

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW0980
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW0980-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 torR739(del)::FRT-kan-FRT
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=107248 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc2.biology.yale.edu/Strain.php?ID=107248 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:29558
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OMP:0006045
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increased resistance to beta-lactam compound
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Relative to: OMP_AN:27534

<hr>Genotype differences:<br>
+lacZ4787(del)( +torR739(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:3501) Cefoxitin sodium hydrate
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*chemical concentration= 0.25 ug/ml
*normalized fitness= 3.76 
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OMP_AN:29559
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OMP:0006044
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decreased resistance to beta-lactam
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Relative to: OMP_AN:27537

<hr>Genotype differences:<br>
+lacZ4787(del)( +torR739(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Mecillinam
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:51208) Mecillinam
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*chemical concentration=  0.09 ug/ml
*normalized fitness= -3.18 
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OMP_AN:29560
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OMP:0006040
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decreased resistance to quinolone
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Relative to: OMP_AN:27539

<hr>Genotype differences:<br>
+lacZ4787(del)( +torR739(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
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*chemical concentration= 0.004 ug/ml
*normalized fitness= -3.43 

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==Additional Information==


==Links==


==References==
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