View source for OMP ST:6140 ! Escherichia coli K-12 JW1077

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW1077
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW1077-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 fabH721(del)::kan
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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[http://cgsc.biology.yale.edu/Strain.php?ID=99704 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc.biology.yale.edu/Strain.php?ID=99704 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:800 ! Escherichia coli K-12 BW25113
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:1218
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OMP:0007092
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decreased cell motility by swarming
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Relative to: OMP_AN:881

<hr>Genotype differences:<br>
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +fabH721(del)  -IN(rrnD-rrnE)1
<hr>Condition differences:<br>
no differences
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*temperature:33C
*medium:swarming motility medium
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ECO:0005803
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motility assay evidence
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PMID:17122336
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|
 
|- 
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OMP_AN:1219
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OMP:0007093
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decreased cell motility by swimming
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Relative to: OMP_AN:882

<hr>Genotype differences:<br>
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +fabH721(del)  -IN(rrnD-rrnE)1
<hr>Condition differences:<br>
no differences
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*temperature:33C
*medium:swimming motility medium
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ECO:0005803
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motility assay evidence
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PMID:17122336
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OMP_AN:29689
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OMP:0007896
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decreased resistance to a surfactant
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Relative to: OMP_AN:27581

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:3020) Benzalkonium chloride
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*chemical concentration=  25 ug/ml
*normalized fitness= -13.54 
|- 
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OMP_AN:29690
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OMP:0006044
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decreased resistance to beta-lactam
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Relative to: OMP_AN:27535

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
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*chemical concentration=  18 ug/ml
*normalized fitness= -4.68 
|- 
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OMP_AN:29691
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OMP:0007903
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decreased resistance to bile acids
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Relative to: OMP_AN:27586

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:9177) Deoxycholate sodium
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*chemical concentration=  0.5 %
*normalized fitness= -3.91 
|- 
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OMP_AN:29692
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OMP:0006044
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decreased resistance to beta-lactam
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Relative to: OMP_AN:27537

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:51208) Mecillinam
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*chemical concentration= 0.03 ug/ml
*normalized fitness= -3.41 
|- 
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OMP_AN:29693
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OMP:0007879
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decreased resistance to an antimicrobial agent
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Relative to: OMP_AN:27588

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:164200) Triclosan/Irgasan
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*chemical concentration= 0.05 ug/ml
*normalized fitness= -8.35 
|- 
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OMP_AN:29694
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OMP:0007879
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decreased resistance to an antimicrobial agent
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Relative to: OMP_AN:27560

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:16219032) Bacitracin Zinc Sulfate
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*chemical concentration=  300 ug/ml
*normalized fitness= -13.92 
|- 
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OMP_AN:29695
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OMP:0007008
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decreased population growth at acidic pH
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Relative to: OMP_AN:27622

<hr>Genotype differences:<br>
+lacZ4787(del)( +fabH721(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
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*chemical concentration= pH 4 
*normalized fitness= -2.89 

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==Additional Information==


==Links==


==References==
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