View source for OMP ST:1124 ! Escherichia coli K-12 JW0325

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW0325
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW0325-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 prpD775(del)::kan
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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[http://cgsc.biology.yale.edu/Strain.php?ID=106803 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc.biology.yale.edu/Strain.php?ID=106803 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:800 ! Escherichia coli K-12 BW25113
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
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OMP_AN:1040
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OMP:0007092
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decreased cell motility by swarming
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Relative to: OMP_AN:881

<hr>Genotype differences:<br>
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +prpD775(del)  -IN(rrnD-rrnE)1
<hr>Condition differences:<br>
no differences
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*temperature:33C
*medium:swarming motility medium
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ECO:0005803
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motility assay evidence
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PMID:17122336
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OMP_AN:28262
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OMP:0007174
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increased resistance to a host defense peptide
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Relative to: OMP_AN:27563

<hr>Genotype differences:<br>
+lacZ4787(del)( +prpD775(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Indolicidin
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (UniProtKB:P33046) Indolicidin
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*chemical concentration= 0.1 ug/ml
*normalized fitness= 4.39 
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OMP_AN:28263
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OMP:0007878
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increased resistance to an antimicrobial agent
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Relative to: OMP_AN:27516

<hr>Genotype differences:<br>
+lacZ4787(del)( +prpD775(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:445629) Thiolactomycin
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*chemical concentration=  50 uM
*normalized fitness= 3.48 
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OMP_AN:28264
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OMP:0006037
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increased resistance to macrolide
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Relative to: OMP_AN:27521

<hr>Genotype differences:<br>
+lacZ4787(del)( +prpD775(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:LB agar
*medium:Spiramycin
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CID:6419898) Spiramycin
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*chemical concentration= 1 ug/ml
*normalized fitness= 3.57 

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==Additional Information==


==Links==


==References==
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