View source for OMP ST:1074 ! Escherichia coli K-12 JW0711

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==Strain Summary==
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!align=left align='left' bgcolor='#CCCCFF' |Strain Name
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Escherichia coli K-12 JW0711
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!align=left align='left' bgcolor='#CCCCFF' |Synonyms
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JW0711-1
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!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
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*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
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!align=left align='left' bgcolor='#CCCCFF' |Genotype
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DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 sdhC771(del)::kan
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!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
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[http://cgsc.biology.yale.edu/Strain.php?ID=99841 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Strain availability
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[http://cgsc.biology.yale.edu/Strain.php?ID=99841 Coli Genetic Stock Center]
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!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:800 ! Escherichia coli K-12 BW25113
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!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
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==Notes==


==Phenotype Annotation==
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!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|- 
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OMP_AN:986
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OMP:0007092
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decreased cell motility by swarming
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Relative to: OMP_AN:881

<hr>Genotype differences:<br>
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +sdhC771(del)  -IN(rrnD-rrnE)1
<hr>Condition differences:<br>
no differences
|
*temperature:33C
*medium:swarming motility medium
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ECO:0005803
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motility assay evidence
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PMID:17122336
|

|
 
|- 
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OMP_AN:29070
|

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OMP:0007075
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decreased growth factor requirement
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Relative to: OMP_AN:27601

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:32954) Sodium Acetate anhydrous
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*chemical concentration= 0.6%
*normalized fitness= -7.86 
|- 
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OMP_AN:29071
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OMP:0007070
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decreased organic carbon source utilization
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Relative to: OMP_AN:27611

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
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ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -7.86 
|- 
|
OMP_AN:29072
|

|
OMP:0007886
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decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|

*chemical concentration=  4 mM (LB)
*normalized fitness= -3.79 
|- 
|
OMP_AN:29073
|

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OMP:0007912
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decreased resistance to a chelator
|
Relative to: OMP_AN:27507

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:64758) EDTA disodium salt dihydrate
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*chemical concentration=   1 mM
*normalized fitness= -3.22 
|- 
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OMP_AN:29074
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OMP:0007249
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decreased resistance to a chemical
|
Relative to: OMP_AN:27511

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:28918) (-)-Epinephrine
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*chemical concentration= 50 uM
*normalized fitness= -4.47 
|- 
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OMP_AN:29075
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OMP:0007249
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decreased resistance to a chemical
|
Relative to: OMP_AN:27510

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:27504) Mitomycin C
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*chemical concentration= 0.1 ug/ml
*normalized fitness= -3.24 
|- 
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OMP_AN:29076
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OMP:0007250
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increased resistance to a chemical
|
Relative to: OMP_AN:27574

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:28786) Paraquat dichloride
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*chemical concentration=  5 uM
*normalized fitness= 3.51 
|- 
|
OMP_AN:29077
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OMP:0007075
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decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
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*temperature:37C
*medium:M9
*medium:Succinic acid
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
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PMID:21185072
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towards some (CHEBI:15741) Succinic acid
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*chemical concentration= 0.3%
*normalized fitness= -9.24 
|- 
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OMP_AN:29078
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OMP:0007070
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decreased organic carbon source utilization
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Relative to: OMP_AN:27617

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -9.24 
|- 
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OMP_AN:29079
|

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OMP:0007879
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decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -3.82 
|- 
|
OMP_AN:29080
|

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OMP:0006040
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decreased resistance to quinolone
|
Relative to: OMP_AN:27542

<hr>Genotype differences:<br>
+lacZ4787(del)( +sdhC771(del)  -lacZ4787(del)
<hr>Condition differences:<br>
no differences
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
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ECO:0007005
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high throughput direct assay evidence used in manual assertion
|
PMID:21185072
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towards some (CHEBI:100246) Norfloxacin
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*chemical concentration= 0.01 ug/ml
*normalized fitness= -3.69 

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==Additional Information==


==Links==


==References==
{{RefHelp}}<references/>