View source for PMID:23224554

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!align=left  |Citation
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'''Al Mamun, AA , Lombardo, MJ , Shee, C , Lisewski, AM , Gonzalez, C , Lin, D , Nehring, RB , Saint-Ruf, C , Gibson, JL , Frisch, RL , Lichtarge, O , Hastings, PJ  and Rosenberg, SM '''  (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. ''Science'' '''338''':1344-8
|-
!align=left  |Abstract
||
Mechanisms of DNA repair and mutagenesis are defined on the basis of relatively few proteins acting on DNA, yet the identities and functions of all proteins required are unknown. Here, we identify the network that underlies mutagenic repair of DNA breaks in stressed Escherichia coli and define functions for much of it. Using a comprehensive screen, we identified a network of ≥93 genes that function in mutation. Most operate upstream of activation of three required stress responses (RpoS, RpoE, and SOS, key network hubs), apparently sensing stress. The results reveal how a network integrates mutagenic repair into the biology of the cell, show specific pathways of environmental sensing, demonstrate the centrality of stress responses, and imply that these responses are attractive as potential drug targets for blocking the evolution of pathogens.
|-
!align=left  |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=23224554 PubMed]
Online version:[http://dx.doi.org/10.1126/science.1226683 10.1126/science.1226683]
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!align=left  |Keywords
||


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==Main Points of the Paper ==
{{LitSignificance}}

== Materials and Methods Used ==
{{LitMaterials}}

==Phenotype Annotations==
{{AnnotationTableHelp}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S50ca50fd15708"  class=" tableEdit Phenotype_Table_2"  
|- align='left' bgcolor='#CCCCFF'
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''srlA<sup>+</sup>''
*Genotype of Experimental Strain : ''srlA777(del)::FRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ybjT<sup>+</sup>''
*Genotype of Experimental Strain : ''ybjT770(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''treR<sup>+</sup>''
*Genotype of Experimental Strain : ''treR788(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yjcC''
*Genotype of Experimental Strain : ''yjcC755(del)::FRTKanFRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yjcC''
*Genotype of Experimental Strain : ''yjcC750::FRTKanFRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ytjB''
*Genotype of Experimental Strain : ''ytjB(P)''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''arcA''
*Genotype of Experimental Strain : arcA(P)::Tn10dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ligA''
*Genotype of Experimental Strain : ''ligA''(P)::Tn10dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''apaG''
*Genotype of Experimental Strain : ''apaG762(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''phoU''
*Genotype of Experimental Strain : ''phoU755(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ihfA<sup>+</sup>''
*Genotype of Experimental Strain : ''ihfA786''(del)FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yqgE<sup>+</sup>''
*Genotype of Experimental Strain : ''yqgE723''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yfjL<sup>+</sup>''
*Genotype of Experimental Strain : ''yfjL(P)::Tn10dCam''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''lrp<sup>+</sup>''
*Genotype of Experimental Strain : ''Irp787(del)::FRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''malL<sup>+</sup>''
*Genotype of Experimental Strain : ''mall768''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''acrA<sup>+</sup>''
*Genotype of Experimental Strain : ''acrA748''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''trxB<sup>+</sup>''
*Genotype of Experimental Strain : ''trxB786''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''fre<sup>+</sup>''
*Genotype of Experimental Strain : ''fre784(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cspC<sup>+</sup>''
*Genotype of Experimental Strain : ''cspC747(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''barA<sup>+</sup>''
*Genotype of Experimental Strain : ''barA784(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ifhA<sup>+</sup>''
*Genotype of Experimental Strain : ''ihfA786''(del)FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). A strong mutation, SIM was reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiA<sup>+</sup>''
*Genotype of Experimental Strain : ''ubiA::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiE<sup>+</sup>''
*Genotype of Experimental Strain : ''ubiE778''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hfq<sup>+</sup>''
*Genotype of Experimental Strain : ''hfq722''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoJ<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoJ762''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoC<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoC768(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoL<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoL760(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiH''
*Genotype of Experimental Strain : ''ubiH758''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''dsbA''
*Genotype of Experimental Strain : ''dsbA723''(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoH''
*Genotype of Experimental Strain : ''nuoH764(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yifE''
*Genotype of Experimental Strain : ''yifE782(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''rppH''
*Genotype of Experimental Strain : ''rppH754(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''rpoE''
*Genotype of Experimental Strain : ''rpoE2072::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''prc''
*Genotype of Experimental Strain : ''prc755(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''lon''
*Genotype of Experimental Strain : ''lon725(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nagC''
*Genotype of Experimental Strain : ''nagC725(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoG''
*Genotype of Experimental Strain : ''nuoG''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''rbsK''
*Genotype of Experimental Strain : ''rbsK781(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pepP''
*Genotype of Experimental Strain : ''pepP759''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hemL''
*Genotype of Experimental Strain : ''hemL''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pepP''
*Genotype of Experimental Strain : ''pepP759''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pstB''
*Genotype of Experimental Strain : ''pstB756(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiX''
*Genotype of Experimental Strain : ''ubiX732(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hdfR''
*Genotype of Experimental Strain : ''hdfR785(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
A Stress Induced Mutagenesis phenotype (SIM). The mutation caused a significant decrease in SIM, with mutant frequency being reduced by over 90 percent of wild type levels.  See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''zncC''
*Genotype of Experimental Strain : ''znuC783(del)''::FRT
|
*Reference Condition:
|
0005301
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoK''
*Genotype of Experimental Strain : ''nuoK761(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence 
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pgi''
*Genotype of Experimental Strain : ''pgi721''(del)FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ygfA''
*Genotype of Experimental Strain : ''ygfA763(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yigP''
*Genotype of Experimental Strain : ''yigP''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''mdh''
*Genotype of Experimental Strain : ''mdh761(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyaA''
*Genotype of Experimental Strain : ''cyaA751''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''tatC''
*Genotype of Experimental Strain : ''tatC781(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''glnK''
*Genotype of Experimental Strain : ''glnK736(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''sdhB''
*Genotype of Experimental Strain : ''sdhB774(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yqiC''
*Genotype of Experimental Strain : ''yqiC737(del)::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''apaH''
*Genotype of Experimental Strain : ''apaH761''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyoA''
*Genotype of Experimental Strain : ''cyoA789(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hscB''
*Genotype of Experimental Strain : ''hscB773(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyoD''
*Genotype of Experimental Strain : ''cyoD786(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''dsbC''
*Genotype of Experimental Strain : ''dsbC744(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pstC''
*Genotype of Experimental Strain : ''pstC758(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''znuA''
*Genotype of Experimental Strain : ''znuA782(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pgl''
*Genotype of Experimental Strain : ''pgl739(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''argR''
*Genotype of Experimental Strain : ''argR762''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''fru''
*Genotype of Experimental Strain : ''fruR786(del)''::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''speE''
*Genotype of Experimental Strain : ''speE739(del)''::FRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''sdhD''
*Genotype of Experimental Strain : ''sdhD772(del)::FRT''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cysD''
*Genotype of Experimental Strain : ''cysD''(P)::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''speD<sup>+</sup>''
*Genotype of Experimental Strain : ''speD738''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''proL''
*Genotype of Experimental Strain : ''proL''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''lipB''
*Genotype of Experimental Strain : ''lipB769(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''znuA782''
*Genotype of Experimental Strain : ''znuA782(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiD''
*Genotype of Experimental Strain : ''ubiD''::Tn''10''dCam
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yhhK''
*Genotype of Experimental Strain : ''yhhK::Tn10dCam''
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''metJ''
*Genotype of Experimental Strain : ''metJ725''(del)::FRTKanFRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178
|
in vivo assay evidence
|
Decreased stress-induced mutagenesis (SIM) phenotype. Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherihia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hscB''
*Genotype of Experimental Strain : ''hscB773(del)''::FRT
|
*Reference Condition:
|
0005031
|
decreased stress induced mutagenesis
|
0000178 
|
in vivo assay evidence
|
Stress Induced Mutagenesis Phenotype, the mutation caused a significant decrease in SIM with mutant frequency being decreased by 68 to 89 percent of the wild type. See table S3 for full experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yjcC''
*Genotype of Experimental Strain : ''yjcC755(del)''::FRTKanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S1 & S7.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ligA''
*Genotype of Experimental Strain : ''ligA(P)''::Tn''10''dCam
|
*Reference Condition:
|

|

|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yqgE''
*Genotype of Experimental Strain : ''yqgE723''(del)::FRTKanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yqgE''
*Genotype of Experimental Strain : ''yqgE723''(del)::FRTKanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''uvrY''
*Genotype of Experimental Strain : ''uvrY760(del)''::FRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pstB''
*Genotype of Experimental Strain : ''pstB756''(del)::FRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pgI''
*Genotype of Experimental Strain : ''pgl739(del)''::FRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR4562
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ldcA''
*Genotype of Experimental Strain : ''idcA782(del)''::FRTKanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
An increase in UV Sensitivity. Supplemental Table S7 & S1.  
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR6039
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''uvrY''
*Genotype of Experimental Strain : SMR6039 ''uvrY760(del)''::FRTkanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
The mutation conferred a decrease in Spontaneous SOS-induction.  See table S7 for a summary of experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR6039
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pgi''
*Genotype of Experimental Strain : SMR6039 ''pgi721''(del)FRTKanFRT
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
The mutation conferred a decrease in Spontaneous SOS-induction.  See table S7 for a summary of experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR6039
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''lexA''
*Genotype of Experimental Strain : SMR6039 ''lexA3(Ind<sup>-</sup>)MalB''::Tn9
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
The mutation conferred a decrease in Spontaneous SOS-induction.  See table S7 for a summary of experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR6039
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''recB''
*Genotype of Experimental Strain : SMR6039 ''recB(del)''::Kan
|
*Reference Condition:
|
0005098
|
decreased resistance toward UV radiation
|

|

|
The mutation conferred a decrease in Spontaneous SOS-induction.  See table S7 for a summary of experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11941
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''recC''
*Genotype of Experimental Strain : SMR6039 recC::Tn10DCam
|
*Reference Condition:
|

|

|

|

|
The mutation conferred a decrease in Spontaneous SOS-induction.  See table S7 for a summary of experimental data. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''rpoS<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''rpoS746(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''apaH<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''apaH761(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''cspC<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''cspC747(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyoA<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''cyoA789(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''cyoD<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 ''cyoD786(del)''::FRTKanFRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''fre<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''fre784(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''glnK<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''glnK736(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''hdfR<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''hdfR785(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hfq<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''hfq722(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''metJ<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''metJ725(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''hscB<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''hscB773(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''mdh<sup>+</sup>'' 
*Genotype of Experimental Strain : SMR4562 ''mdh761(del)''::FRTKanFRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoC<sup>+</sup>'' 
*Genotype of Experimental Strain : SMR4562 ''nuoC768(del)''::FRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoG<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRT ''nuoG''::Tn''10''dCam
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoH<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''nuoH764(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: yiaG-yfp FRTcatFRT ''nuoJ<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''nuoJ762(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: yiaG-yfp FRTcatFRT  ''nuoK<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''nuoK761(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: yiaG-yfp FRTcatFRT  ''nuoL<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''nuoL760(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: yiaG-yfp FRTcatFRT  ''pgi<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''pgi721(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''rbsK<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''rbsK781(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT  ''sdhD<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''sdhD772''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT  ''sdhB<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''sdhB774(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT  ''speD<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''speD738(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT  ''speE<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''speE739(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582 (=SMR4562 yiaG-yfp FRTcatFRT)
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT  ''ubiA<sup>+</sup>'' 
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRT ''ubiA''::Tn''10''dCam
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''ubiD<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRT ubiD::Tn10dCam
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''ubiE<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 ''ubiE778(del)''::FRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''ubiH<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''ubiH758(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''ubiX<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''ubiX732(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''yifE<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''yifE786(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''arcB<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 ''arcB738(del)''::FRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Increased Sigma S Activity
|

|

|
The mutation conferred a increase in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''arcA<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 ''arcA726(del)''::FRT yiaG-yfp FRTcatFRT
|
*Reference Condition:
|

|
Increased Sigma S Activity
|

|

|
The mutation conferred a increase in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''rssB<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRTcatFRT ''rssB''::Tet
|
*Reference Condition:
|

|
Increased Sigma S Activity
|

|

|
The mutation conferred a increase in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''rpoE<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''rpoE2072''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''apaH<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''apaH761(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''arcA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''arcA726(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''cyoA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''cyoA789(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''cyoD<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''cyoD786(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''fre<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''fre784(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''fruR<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''fruR786(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''hemL<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''hemL''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''lipB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''lipB769(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''lon<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''lon725(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''lrp<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''lrp787(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''mdh<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''mdh761(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoC<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoC768(del)''::RTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoG<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoG''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoH<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoH764''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoJ<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoJ762(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoK<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoK761(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''nuoL<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''nuoL760(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''phoU<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''phoU755(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''pstB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''pstB756(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''rppH<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''rppH754(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''pstC<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''pstC758(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''sdhB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''sdhB774(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''sdhD<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''sdhD772(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''trxB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''trxB786(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ubiA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ubiA''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ubiD<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ubiD''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ubiE<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ubiE778(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ubiH<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ubiH758(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ubiX<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ubiX732(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ygfA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''ygfA763(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''ygfP<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''yigP''::Tn''10''dCam
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''znuC<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''znuC783(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Decrease in Sigma E activity
|

|

|
The mutation conferred a decrease in sigma E activity. See table S11 for experimental calculations and results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''arcB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''arcB738(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Increased Sigma E Activity
|

|

|
The mutation caused an increase in Sigma<sup>E</sup>. See table S11 for experiment results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''arcA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''arcA726(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Increased Sigma E Activity
|

|

|
The mutation caused an increase in Sigma<sup>E</sup>. See table S11 for experiment results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''rssB<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''rssB''::Tet
|
*Reference Condition:
|

|
Increased Sigma E Activity
|

|

|
The mutation caused an increase in Sigma<sup>E</sup>. See table S11 for experiment results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: CAG45114
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: MG1655 lambda rpoHP3-lacZ ''rseA<sup>+</sup>''
*Genotype of Experimental Strain : CAG45114 ''rseA(del)''::FRTKanFRT
|
*Reference Condition:
|

|
Increased Sigma E Activity
|

|

|
The mutation caused an increase in Sigma<sup>E</sup>. See table S11 for experiment results. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR10582
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: SMR4562 yiaG-yfp FRTcatFRT ''hemL<sup>+</sup>''
*Genotype of Experimental Strain : SMR4562 yiaG-yfp FRT ''hemL''::Tn''10''dCam
|
*Reference Condition:
|

|
Decreased Sigma S Activity
|

|

|
The mutation conferred a decrease in sigma<sup>S</sup> activity relative to the wild type. For experimental calculations refer to table S8. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12023
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''acrA<sup>+</sup>''
*Genotype of Experimental Strain : arcA''::Tn''10''dCam''
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11984
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''acrB<sup>+</sup>''
*Genotype of Experimental Strain : ''acrB747(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: PJH1276
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''Irp<sup>+</sup>''
*Genotype of Experimental Strain : ''Irp787(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12220
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''acrA<sup>+</sup>''
*Genotype of Experimental Strain : ''acrA784(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11989
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''trxB<sup>+</sup>''
*Genotype of Experimental Strain : ''trxB786''(del)::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12007
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''fre<sup>+</sup>''
*Genotype of Experimental Strain : ''fre784(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12232
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ptsB<sup>+</sup>''
*Genotype of Experimental Strain : ''pstB756''(del)::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11967
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiX<sup>+</sup>''
*Genotype of Experimental Strain : ''ubiX732''(del)::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13473
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''phoU<sup>+</sup>''
*Genotype of Experimental Strain : ''phoU753(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12219
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''lipB<sup>+</sup>''
*Genotype of Experimental Strain : ''lipB769(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12302
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cysD<sup>+</sup>''
*Genotype of Experimental Strain : ''cysD"(P)::Tn''10''dCam
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12252
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''sdhD<sup>+</sup>''
*Genotype of Experimental Strain : ''sdhD772(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12240
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''speE<sup>+</sup>''
*Genotype of Experimental Strain : ''speE739(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12002
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''fruR<sup>+</sup>''
*Genotype of Experimental Strain : ''fruR786(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12236
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''znuA<sup>+</sup>''
*Genotype of Experimental Strain : ''znuA782(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12071
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''pstC<sup>+</sup>''
*Genotype of Experimental Strain : ''pstC758(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12574
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyoD<sup>+</sup>''
*Genotype of Experimental Strain : ''cyoD758(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12570
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''cyoA<sup>+</sup>''
*Genotype of Experimental Strain : ''cyoA789(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11990
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''apaH<sup>+</sup>''
*Genotype of Experimental Strain : ''apaH761''(del)::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12332
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''sdhB<sup>+</sup>''
*Genotype of Experimental Strain : ''sdhB774(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12008
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''tatC<sup>+</sup>''
*Genotype of Experimental Strain : ''tatC781(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12060
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''mdh<sup>+</sup>''
*Genotype of Experimental Strain : ''mdh(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR11980
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''yigP<sup>+</sup>''
*Genotype of Experimental Strain : ''yigP''::Tn''10''dCam
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12316
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ygfA<sup>+</sup>''
*Genotype of Experimental Strain : ''ygfA763(del)''::FRTKanFRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13653
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoK<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoK761(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13653
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoK<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoK761(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12235
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hdfR<sup>+</sup>''
*Genotype of Experimental Strain : ''hdfR785(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13640
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoG<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoG''::Tn''10''dCam
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12254
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''Ion<sup>+</sup>''
*Genotype of Experimental Strain : ''Ion725(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR5236
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''rpoE<sup>+</sup>''
*Genotype of Experimental Strain : ''rpoE2072''::Tn''10''dCam
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12210
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''rppH<sup>+</sup>''
*Genotype of Experimental Strain : ''rppH754(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13654
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoH<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoH764(del)''::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12260
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''ubiH<sup>+</sup>''
*Genotype of Experimental Strain : ''ubiH758''(del)::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12223
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoC<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoC768''(del)::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR13652
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''nuoJ<sup>+</sup>''
*Genotype of Experimental Strain : ''nuoJ762''(del)::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 
|- 
|
a mutation or genetic difference within a strain
|
*Taxon: Escherichia coli
*Strain: K-12
*Substrain: SMR12261
*NCBI Taxon ID: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83333&lvl=3&lin=f&keep=1&srchmode=1&unlock 83333]
|
*Genotype of Reference Strain: ''hfq<sup>+</sup>''
*Genotype of Experimental Strain : ''hfq722''(del)::FRT
|
*Reference Condition:
|
OMP:0005113
|
decreased resistance to SDS-EDTA stress
|

|

|
The mutation conferred an increased sensitivity to SDS-EDTA. 
|
 

|- class="tableEdit_footer" 
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.3591.S50ca50fd15708&page=3591&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</span> || || || || || || || || ||
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<!--box uid=d41d8cd98f00b204e9800998ecf8427e.3591.S50ca50fd15708--></protect>

==Notes==
*Reminder to indicate Stationary phase where it is necessary on both ompwiki and ecoliwiki
* The Sigma<sup>E</sup> and Sigma<sup>S</sup> terms are place holders until finalized terms are available.

==References==
{{RefHelp}}
<references/>


[[Category:Publication]]