OMPwiki - User contributions [en]

Main Page

2024-03-22T00:37:45Z

Siegele:

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Phenotype Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===

=====OMP February 2024 Release=====
We are pleased to announce the February 2024 release of the Ontology of Microbial Phenotypes (OMP) is available at:
https://github.com/microbialphenotypes/OMP-ontology/tree/master

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2022-08-16T20:58:53Z

Siegele: /* OMP August 2021 Release */

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Phenotype Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===

=====OMP August 2022 Release=====
We are pleased to announce the August 2022 release of the Ontology of Microbial Phenotypes (OMP) is available at:
https://github.com/microbialphenotypes/OMP-ontology/tree/master

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2022-02-07T07:43:22Z

Siegele: /* OMP August 2021 Release */

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Phenotype Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===

=====OMP August 2021 Release=====
We are pleased to announce the January 2022 release of the Ontology of Microbial Phenotypes (OMP) is available at:
https://github.com/microbialphenotypes/OMP-ontology/tree/master

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

OMP ST:74833 ! Escherichia coli K-12 BW27783

2021-12-29T22:15:08Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="S61ccdafa8511a" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 BW27783
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
BW25113 DE(araFGH) araEp(del Phi(Pcp8-araE)
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- DE(araD-araB)567 DE(rhaD-rhaB)568 Lambda- DE(araH-araF)570(::FRT) hsdR514 lacZ4787(del)(::rrnB-3) rph-1 araEp-532(del)(::FRT) Phi(Pcp8-araE535)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:11739756
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://cgsc.biology.yale.edu/Strain.php?ID=111773 CGSC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32713.S61ccdafa8511a&page=32713&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I61ccdafd9dccb" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32713.I61ccdafd9dccb&page=32713&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74833 ! Escherichia coli K-12 BW27783

2021-12-29T22:02:38Z

Siegele: make strain info table SpecialNewPage

__TOC__

==Strain Summary==


{| id="S61ccdafa8511a" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 BW27783
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
BW25113 DE(araFGH) Phi[araEp(del) Pcp8-araE]
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:11739756
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://cgsc.biology.yale.edu/Strain.php?ID=111773 CGSC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32713.S61ccdafa8511a&page=32713&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I61ccdafd9dccb" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32713.I61ccdafd9dccb&page=32713&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74833 ! Escherichia coli K-12 BW27783

2021-12-29T22:02:33Z

Siegele: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74832 ! Escherichia coli K-12 MG1655 wbbL::IS5

2021-12-29T21:21:18Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="L61ccd07de1a26" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655 wbbL::IS5
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MAJ1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 wbbL::IS5
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:29686141
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32712.L61ccd07de1a26&page=32712&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H61ccd07ee46f0" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32712.H61ccd07ee46f0&page=32712&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74832 ! Escherichia coli K-12 MG1655 wbbL::IS5

2021-12-29T21:17:52Z

Siegele: make strain info table SpecialNewPage

__TOC__

==Strain Summary==


{| id="L61ccd07de1a26" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655 wbbL::IS5
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MAJ1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:29686141
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32712.L61ccd07de1a26&page=32712&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H61ccd07ee46f0" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32712.H61ccd07ee46f0&page=32712&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74832 ! Escherichia coli K-12 MG1655 wbbL::IS5

2021-12-29T21:17:49Z

Siegele: Page creation by SpecialNewPage

new strain page placeholder

Main Page

2021-08-15T09:02:00Z

Siegele:

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Phenotype Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

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===News===

=====OMP August 2021 Release=====
We are pleased to announce the August 2021 release of the Ontology of Microbial Phenotypes (OMP) is available at:
https://github.com/microbialphenotypes/OMP-ontology/tree/master

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2021-07-05T21:26:11Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="S5be4c9cc6cf4f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:21185072
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.S5be4c9cc6cf4f&page=32098&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.

Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.

The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins (<ref name='PMID:19734312'/>). See the original paper for additional details about the strains used in the screen.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5be4c9cc7a839" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27500
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
0.1, 0.2, 0.3, 0.4 ug/ml
|-
|
OMP_AN:27501
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|
0.4, 0.8, 1.2 mM
|-
|
OMP_AN:27502
|

|
OMP:0007373
|
resistant to alkylating agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|
0.05%
|-
|
OMP_AN:27503
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nitrofurantoin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:71415) Nitrofurantoin
|
0.1, 0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27504
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Novobiocin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31924) Novobiocin sodium salt
|
4, 6, 8, 10, 12, 30 ug/ml
|-
|
OMP_AN:27505
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Methotrexate hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:165528) Methotrexate hydrate
|
1, 25 ug/ml
|-
|
OMP_AN:27506
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxorubicin hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31522) Doxorubicin hydrochloride
|
1, 10 ug/ml
|-
|
OMP_AN:27507
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758) EDTA disodium salt dihydrate
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27508
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EGTA
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:30740) EGTA
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27509
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
|
20, 50, 100 ug/ml
|-
|
OMP_AN:27510
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27504) Mitomycin C
|
0.1 ug/ml
|-
|
OMP_AN:27511
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|
50, 250, 1000 uM
|-
|
OMP_AN:27512
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydroxyurea
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:44423) Hydroxyurea
|
1, 5, 10 mM
|-
|
OMP_AN:27513
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|
0.02, 0.05, 0.1 mM
|-
|
OMP_AN:27514
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|
3, 6, 12, 24 uM
|-
|
OMP_AN:27515
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|
1, 5, 20, 50 ug/ml
|-
|
OMP_AN:27516
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:445629) Thiolactomycin
|
1, 5, 50 uM
|-
|
OMP_AN:27517
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nigericin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16760591) Nigericin sodium salt
|
0.1, 1, 5 uM
|-
|
OMP_AN:27518
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|
0.02, 0.1, 1 ug/ml
|-
|
OMP_AN:27519
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Clarithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3732) Clarithromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27520
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27521
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|
1, 5, 20 ug/ml
|-
|
OMP_AN:27522
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxycycline hyclate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34730) Doxycycline hyclate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27523
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Minocycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50697) Minocycline hydrochloride
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27524
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tetracycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:35006) Tetracycline hydrochloride
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27525
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amikacin sulfate salt (disulfate)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)
|
0.05, 0.1, 0.2 ug/ml
|-
|
OMP_AN:27526
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Gentamicin sulfate salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:5312) Gentamicin sulfate salt
|
0.05, 0.1 ug/ml
|-
|
OMP_AN:27527
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spectinomycin dihydrochloride pentahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate
|
4, 6 ug/ml
|-
|
OMP_AN:27528
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32158) Streptomycin sulfate
|
0.05 ug/ml
|-
|
OMP_AN:27529
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|
0.05, 0.1, 0.2, 0.4 ug/ml
|-
|
OMP_AN:27530
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amoxicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2676) Amoxicillin
|
0.25, 0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27531
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ampicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28971) Ampicillin
|
1, 2, 4, 8 ug/ml
|-
|
OMP_AN:27532
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|
0.02, 0.04 ug/ml
|-
|
OMP_AN:27533
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Carbenicillin disodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34609) Carbenicillin disodium
|
0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27534
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27535
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|
6, 12, 18, 24 ug/ml
|-
|
OMP_AN:27536
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|
0.025, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27537
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|
0.03, 0.06, 0.09, 0.12 ug/ml
|-
|
OMP_AN:27538
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
0.5, 5, 40 ug/ml
|-
|
OMP_AN:27539
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|
0.004, 0.006, 0.008 ug/ml
|-
|
OMP_AN:27540
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Levofloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:63598) Levofloxacin
|
0.002 ug/ml
|-
|
OMP_AN:27541
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27542
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:100246) Norfloxacin
|
0.01, 0.02, 0.04 ug/ml
|-
|
OMP_AN:27543
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|
0.1, 0.2, 0.5 ug/ml
|-
|
OMP_AN:27544
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27545
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Isoniazid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:6030) Isoniazid
|
0.2, 1, 1.5 mM
|-
|
OMP_AN:27546
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|
0.2, 1, 10 ug/ml
|-
|
OMP_AN:27547
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydrogen peroxide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16240) Hydrogen peroxide
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27548
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cerulenin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:171741) Cerulenin
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27549
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27550
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ethidium Bromide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4883) Ethidium Bromide
|
2, 10, 50 ug/ml
|-
|
OMP_AN:27551
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|
1, 2 ug/ml
|-
|
OMP_AN:27552
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:10110) Azidothymidine
|
0.5, 1, 2.5 ng/ml
|-
|
OMP_AN:27553
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|
1, 5, 25 ug/ml
|-
|
OMP_AN:27554
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tunicamycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:29699) Tunicamycin
|
1, 3, 7.5 ug/ml
|-
|
OMP_AN:27555
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin disodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162) Fosfomycin disodium salt
|
1 ug/ml
|-
|
OMP_AN:27556
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|
1, 10 ug/ml
|-
|
OMP_AN:27557
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:A22
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:2830968) A22
|
0.5, 2, 5, 15 ug/ml
|-
|
OMP_AN:27558
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:D-Cycloserine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:40009) D-Cycloserine
|
16 ug/ml
|-
|
OMP_AN:27559
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Actinomycin D
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27666 CID:457193) Actinomycin D
|
2.5, 5, 10, 15 ug/ml
|-
|
OMP_AN:27560
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16219032) Bacitracin Zinc Sulfate
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27561
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bleomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34582) Bleomycin sulfate
|
0.1, 0.5, 1, 2 ug/ml
|-
|
OMP_AN:27562
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cecropin B
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16130488) Cecropin B
|
0.1, 0.3 ug/ml
|-
|
OMP_AN:27563
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|
0.1 ug/ml
|-
|
OMP_AN:27564
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phleomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75044) Phleomycin
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27565
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8310) Polymyxin B sulfate
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27566
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Vancomycin HCl hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9932) Vancomycin HCl hydrate
|
10, 20, 50 ug/ml
|-
|
OMP_AN:27567
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Theophylline anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28177) Theophylline anhydrous
|
10, 100 ug/ml
|-
|
OMP_AN:27568
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27569
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EtOH
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16236) EtOH
|
2, 4, 6 %
|-
|
OMP_AN:27570
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|
1, 20, 50 ug/ml
|-
|
OMP_AN:27571
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
0.1, 0.5, 2 ug/ml
|-
|
OMP_AN:27572
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|
5, 20, 50 uM
|-
|
OMP_AN:27573
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|
1, 5, 10, 30 mM
|-
|
OMP_AN:27574
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|
0.2, 1, 5, 10, 18 uM
|-
|
OMP_AN:27575
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Acriflavine (acriflavinium chloride)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
|
2, 10 ug/ml
|-
|
OMP_AN:27576
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamethizole
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9331) Sulfamethizole
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27577
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
50, 100 ug/ml
|-
|
OMP_AN:27578
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cobalt stress-Co(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate
|
0.1, 0.5 mM (LB)
|-
|
OMP_AN:27579
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|
1, 2, 4 mM (LB)
|-
|
OMP_AN:27580
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nickel stress-Ni(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate
|
0.1, 1 mM (LB)
|-
|
OMP_AN:27581
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|
1, 10, 25 ug/ml
|-
|
OMP_AN:27582
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984) SDS
|
0.5, 1, 2, 3, 4 %
|-
|
OMP_AN:27583
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triton X-100
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9750) Triton X-100
|
0.01, 0.03, 0.2 %
|-
|
OMP_AN:27584
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|
0.1, 0.5, 1 %
|-
|
OMP_AN:27585
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cholate sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23679061) Cholate sodium hydrate
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27586
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9177) Deoxycholate sodium
|
0.1, 0.5, 2 %
|-
|
OMP_AN:27587
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27588
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|
0.05 ug/ml
|-
|
OMP_AN:27589
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|
6 + 0.03 ug/ml
|-
|
OMP_AN:27590
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
0.05, 0.2 ug/ml (in 50 mg/ml G6P)
|-
|
OMP_AN:27591
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
0.1 + 50 ug/ml
|-
|
OMP_AN:27592
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
50 ug/ml
|-
|
OMP_AN:27593
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Norepinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:18357) (-)-Norepinephrine
|
100, 1000 uM
|-
|
OMP_AN:27594
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM
|-
|
OMP_AN:27595
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
150, 300, 450, 600 mM
|-
|
OMP_AN:27596
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefaclor
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3478) Cefaclor
|
1, 2, 3 ug/ml
|-
|
OMP_AN:27597
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|
1, 5, 10 uM
|-
|
OMP_AN:27598
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27599
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27600
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27601
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27602
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27603
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27604
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27605
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27606
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27607
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27608
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27609
|

|
OMP:0007962
|
presence of cell population growth during nutrient limitation
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27610
|

|
OMP:0007306
|
presence of inorganic nitrogen source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27611
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27612
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27613
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27614
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27615
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27616
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27617
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27618
|

|
OMP:0005190
|
presence of anaerobic growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Anaerobic
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

|-
|
OMP_AN:27619
|

|
OMP:0007282
|
presence of UV radiation resistance
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
6, 12, 18, 24 sec
|-
|
OMP_AN:27620
|

|
OMP:0007956
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:16C, 18C, or 20C
*medium:LB agar
*medium:Low temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
OMP:0007956 is presence of population growth at low temperature

16C, 18C, or 20C
|-
|
OMP_AN:27621
|

|
OMP:0007950
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:40C, 42C, 43.5C, or 45C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
40, 42, 43.5, or 45 C

OMP:0007950 presence of population growth at high temperature
|-
|
OMP_AN:27622
|

|
OMP:0007945
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:pH 4, 4.5, 5.0, or 6.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|
pH 4, 4.5, 5.0, or 6.0

OMP:0007945 presence of population growth at acidic pH
|-
|
OMP_AN:27623
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:pH 8, 9, 9.5, or 10
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|
pH 8, 9, 9.5, or 10

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.K5be4c9cc7a839&page=32098&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9002 ! Saccharomyces cerevisiae BY4741

2021-07-05T21:14:00Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="B5ac920647450e" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201388
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/Products/All/201388.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15556.B5ac920647450e&page=15556&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5ac9206476370" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22734
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22737
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:22738
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911]
glucitol
|

|-
|
OMP_AN:22739
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660]
nystatin
|

|-
|
OMP_AN:22740
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911]
NaCl
|

|-
|
OMP_AN:22741
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*pH:8.0
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22742
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22743
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:22744
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:22745
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:22746
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15556.K5ac9206476370&page=15556&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2021-07-05T21:12:33Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*pH:8.0
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|
presence of population growth on defined medium
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:5450 ! Schizosaccharomyces pombe asp1delta

2021-07-05T21:10:46Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="S57e00bf1b6f7a" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Schizosaccharomyces pombe asp1delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Schizosaccharomyces pombe
*Subspecies and/or strain: asp1delta
*NCBI Taxonomy ID:4896
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
ade6-M210/ade6-M216 ura4-D18/ura4-D18 leu1-32/leu1-32 asp1delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:20473289
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
http://us.bioneer.com/products/spombe/spombeoverview.aspx
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:1112 ! Schizosaccharomyces pombe SP286
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.13060.S57e00bf1b6f7a&page=13060&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W57e00bf1b8be8" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:6669
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
:?
temperature:?25-32C
|

|

|

|
PMID:20473289
|

|

|-
|
OMP_AN:12412
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
medium:YES?
|
*temperature:25-32C
*medium:YES
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000003 low
has_penetrance: FYPO_EXT:0000001 high
|

|-
|
OMP_AN:18604
|
NOT
|
OMP:0007713
|
altered vegetative cell size
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
medium:YES?
|
*medium:YES
*temperature:25-32C
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000003 low
has_penetrance: FYPO_EXT:0000001 high
|

|-
|
OMP_AN:19124
|

|
OMP:0007708
|
altered vegetative cell shape
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
medium:YES?
|
*medium:YES
*temperature:25-32C
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000003 low
has_penetrance: FYPO_EXT:0000001 high
|

|-
|
OMP_AN:19340
|

|
OMP:0007716
|
viable vegetative cell
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
medium:YES?
|
*temperature:25-32C
*medium:YES
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|

|

|-
|
OMP_AN:22669
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
temperature:above ~32 degrees Celsius25-32C
medium:YES?
|
*temperature:above ~32 degrees Celsius
*medium:YES
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000001 high
|

|-
|
OMP_AN:22670
|

|
OMP:0007708
|
altered vegetative cell shape
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
temperature:above ~32 degrees Celsius25-32C
medium:YES?
|
*temperature:above ~32 degrees Celsius
*medium:YES
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000001 high
|

|-
|
OMP_AN:22671
|

|
OMP:0007716
|
viable vegetative cell
|
Relative to: OMP_AN:1028

<hr>Genotype differences: 
+asp1delta -h+/h+
<hr>Condition differences: 
temperature:above ~32 degrees Celsius25-32C
medium:YES?
|
*temperature:above ~32 degrees Celsius
*medium:YES
|
ECO:0001098
|
microscopy evidence
|
PMID:23697806
|
has_penetrance: FYPO_EXT:0000001 high
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.13060.W57e00bf1b8be8&page=13060&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2021-07-05T21:07:14Z

Siegele: Reverted edits by Siegele (talk) to last revision by Peterwu

__TOC__

==Strain Summary==
<protect>

{| id="S5be4c9cc6cf4f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:21185072
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.S5be4c9cc6cf4f&page=32098&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.

Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.

The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins (<ref name='PMID:19734312'/>). See the original paper for additional details about the strains used in the screen.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5be4c9cc7a839" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27500
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
0.1, 0.2, 0.3, 0.4 ug/ml
|-
|
OMP_AN:27501
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|
0.4, 0.8, 1.2 mM
|-
|
OMP_AN:27502
|

|
OMP:0007373
|
resistant to alkylating agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|
0.05%
|-
|
OMP_AN:27503
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nitrofurantoin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:71415) Nitrofurantoin
|
0.1, 0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27504
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Novobiocin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31924) Novobiocin sodium salt
|
4, 6, 8, 10, 12, 30 ug/ml
|-
|
OMP_AN:27505
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Methotrexate hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:165528) Methotrexate hydrate
|
1, 25 ug/ml
|-
|
OMP_AN:27506
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxorubicin hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31522) Doxorubicin hydrochloride
|
1, 10 ug/ml
|-
|
OMP_AN:27507
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758) EDTA disodium salt dihydrate
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27508
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EGTA
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:30740) EGTA
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27509
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
|
20, 50, 100 ug/ml
|-
|
OMP_AN:27510
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27504) Mitomycin C
|
0.1 ug/ml
|-
|
OMP_AN:27511
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|
50, 250, 1000 uM
|-
|
OMP_AN:27512
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydroxyurea
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:44423) Hydroxyurea
|
1, 5, 10 mM
|-
|
OMP_AN:27513
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|
0.02, 0.05, 0.1 mM
|-
|
OMP_AN:27514
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|
3, 6, 12, 24 uM
|-
|
OMP_AN:27515
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|
1, 5, 20, 50 ug/ml
|-
|
OMP_AN:27516
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:445629) Thiolactomycin
|
1, 5, 50 uM
|-
|
OMP_AN:27517
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nigericin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16760591) Nigericin sodium salt
|
0.1, 1, 5 uM
|-
|
OMP_AN:27518
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|
0.02, 0.1, 1 ug/ml
|-
|
OMP_AN:27519
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Clarithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3732) Clarithromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27520
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27521
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|
1, 5, 20 ug/ml
|-
|
OMP_AN:27522
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxycycline hyclate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34730) Doxycycline hyclate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27523
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Minocycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50697) Minocycline hydrochloride
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27524
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tetracycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:35006) Tetracycline hydrochloride
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27525
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amikacin sulfate salt (disulfate)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)
|
0.05, 0.1, 0.2 ug/ml
|-
|
OMP_AN:27526
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Gentamicin sulfate salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:5312) Gentamicin sulfate salt
|
0.05, 0.1 ug/ml
|-
|
OMP_AN:27527
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spectinomycin dihydrochloride pentahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate
|
4, 6 ug/ml
|-
|
OMP_AN:27528
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32158) Streptomycin sulfate
|
0.05 ug/ml
|-
|
OMP_AN:27529
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|
0.05, 0.1, 0.2, 0.4 ug/ml
|-
|
OMP_AN:27530
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amoxicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2676) Amoxicillin
|
0.25, 0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27531
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ampicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28971) Ampicillin
|
1, 2, 4, 8 ug/ml
|-
|
OMP_AN:27532
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|
0.02, 0.04 ug/ml
|-
|
OMP_AN:27533
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Carbenicillin disodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34609) Carbenicillin disodium
|
0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27534
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27535
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|
6, 12, 18, 24 ug/ml
|-
|
OMP_AN:27536
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|
0.025, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27537
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|
0.03, 0.06, 0.09, 0.12 ug/ml
|-
|
OMP_AN:27538
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
0.5, 5, 40 ug/ml
|-
|
OMP_AN:27539
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|
0.004, 0.006, 0.008 ug/ml
|-
|
OMP_AN:27540
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Levofloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:63598) Levofloxacin
|
0.002 ug/ml
|-
|
OMP_AN:27541
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27542
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:100246) Norfloxacin
|
0.01, 0.02, 0.04 ug/ml
|-
|
OMP_AN:27543
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|
0.1, 0.2, 0.5 ug/ml
|-
|
OMP_AN:27544
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27545
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Isoniazid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:6030) Isoniazid
|
0.2, 1, 1.5 mM
|-
|
OMP_AN:27546
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|
0.2, 1, 10 ug/ml
|-
|
OMP_AN:27547
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydrogen peroxide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16240) Hydrogen peroxide
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27548
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cerulenin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:171741) Cerulenin
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27549
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27550
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ethidium Bromide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4883) Ethidium Bromide
|
2, 10, 50 ug/ml
|-
|
OMP_AN:27551
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|
1, 2 ug/ml
|-
|
OMP_AN:27552
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:10110) Azidothymidine
|
0.5, 1, 2.5 ng/ml
|-
|
OMP_AN:27553
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|
1, 5, 25 ug/ml
|-
|
OMP_AN:27554
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tunicamycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:29699) Tunicamycin
|
1, 3, 7.5 ug/ml
|-
|
OMP_AN:27555
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin disodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162) Fosfomycin disodium salt
|
1 ug/ml
|-
|
OMP_AN:27556
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|
1, 10 ug/ml
|-
|
OMP_AN:27557
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:A22
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:2830968) A22
|
0.5, 2, 5, 15 ug/ml
|-
|
OMP_AN:27558
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:D-Cycloserine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:40009) D-Cycloserine
|
16 ug/ml
|-
|
OMP_AN:27559
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Actinomycin D
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27666 CID:457193) Actinomycin D
|
2.5, 5, 10, 15 ug/ml
|-
|
OMP_AN:27560
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16219032) Bacitracin Zinc Sulfate
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27561
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bleomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34582) Bleomycin sulfate
|
0.1, 0.5, 1, 2 ug/ml
|-
|
OMP_AN:27562
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cecropin B
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16130488) Cecropin B
|
0.1, 0.3 ug/ml
|-
|
OMP_AN:27563
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|
0.1 ug/ml
|-
|
OMP_AN:27564
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phleomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75044) Phleomycin
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27565
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8310) Polymyxin B sulfate
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27566
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Vancomycin HCl hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9932) Vancomycin HCl hydrate
|
10, 20, 50 ug/ml
|-
|
OMP_AN:27567
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Theophylline anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28177) Theophylline anhydrous
|
10, 100 ug/ml
|-
|
OMP_AN:27568
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27569
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EtOH
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16236) EtOH
|
2, 4, 6 %
|-
|
OMP_AN:27570
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|
1, 20, 50 ug/ml
|-
|
OMP_AN:27571
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
0.1, 0.5, 2 ug/ml
|-
|
OMP_AN:27572
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|
5, 20, 50 uM
|-
|
OMP_AN:27573
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|
1, 5, 10, 30 mM
|-
|
OMP_AN:27574
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|
0.2, 1, 5, 10, 18 uM
|-
|
OMP_AN:27575
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Acriflavine (acriflavinium chloride)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
|
2, 10 ug/ml
|-
|
OMP_AN:27576
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamethizole
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9331) Sulfamethizole
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27577
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
50, 100 ug/ml
|-
|
OMP_AN:27578
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cobalt stress-Co(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate
|
0.1, 0.5 mM (LB)
|-
|
OMP_AN:27579
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|
1, 2, 4 mM (LB)
|-
|
OMP_AN:27580
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nickel stress-Ni(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate
|
0.1, 1 mM (LB)
|-
|
OMP_AN:27581
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|
1, 10, 25 ug/ml
|-
|
OMP_AN:27582
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984) SDS
|
0.5, 1, 2, 3, 4 %
|-
|
OMP_AN:27583
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triton X-100
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9750) Triton X-100
|
0.01, 0.03, 0.2 %
|-
|
OMP_AN:27584
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|
0.1, 0.5, 1 %
|-
|
OMP_AN:27585
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cholate sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23679061) Cholate sodium hydrate
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27586
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9177) Deoxycholate sodium
|
0.1, 0.5, 2 %
|-
|
OMP_AN:27587
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27588
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|
0.05 ug/ml
|-
|
OMP_AN:27589
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|
6 + 0.03 ug/ml
|-
|
OMP_AN:27590
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
0.05, 0.2 ug/ml (in 50 mg/ml G6P)
|-
|
OMP_AN:27591
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
0.1 + 50 ug/ml
|-
|
OMP_AN:27592
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
50 ug/ml
|-
|
OMP_AN:27593
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Norepinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:18357) (-)-Norepinephrine
|
100, 1000 uM
|-
|
OMP_AN:27594
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM
|-
|
OMP_AN:27595
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
150, 300, 450, 600 mM
|-
|
OMP_AN:27596
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefaclor
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3478) Cefaclor
|
1, 2, 3 ug/ml
|-
|
OMP_AN:27597
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|
1, 5, 10 uM
|-
|
OMP_AN:27598
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27599
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27600
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27601
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27602
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27603
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27604
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27605
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27606
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27607
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27608
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27609
|

|
OMP:0007962
|
presence of cell population growth during nutrient limitation
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27610
|

|
OMP:0007306
|
presence of inorganic nitrogen source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27611
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27612
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27613
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27614
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27615
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27616
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27617
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27618
|

|
OMP:0005190
|
presence of anaerobic growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Anaerobic
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

|-
|
OMP_AN:27619
|

|
OMP:0007282
|
presence of UV radiation resistance
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
6, 12, 18, 24 sec
|-
|
OMP_AN:27620
|

|
OMP:0007956
|
presence of population growth at low temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Low temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
16, 18, 20 C
|-
|
OMP_AN:27621
|

|
OMP:0007950
|
presence of population growth at high temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
40, 42, 43.5, 45 C
|-
|
OMP_AN:27622
|

|
OMP:0007945
|
presence of population growth at acidic pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|
pH 4, 4.5, 5, 6
|-
|
OMP_AN:27623
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|
pH 8, 9, 9.5, 10

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.K5be4c9cc7a839&page=32098&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2021-07-05T21:01:30Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="S5be4c9cc6cf4f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:21185072
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.S5be4c9cc6cf4f&page=32098&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.

Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.

The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins (<ref name='PMID:19734312'/>). See the original paper for additional details about the strains used in the screen.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5be4c9cc7a839" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27500
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
0.1, 0.2, 0.3, 0.4 ug/ml
|-
|
OMP_AN:27501
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|
0.4, 0.8, 1.2 mM
|-
|
OMP_AN:27502
|

|
OMP:0007373
|
resistant to alkylating agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|
0.05%
|-
|
OMP_AN:27503
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nitrofurantoin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:71415) Nitrofurantoin
|
0.1, 0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27504
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Novobiocin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31924) Novobiocin sodium salt
|
4, 6, 8, 10, 12, 30 ug/ml
|-
|
OMP_AN:27505
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Methotrexate hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:165528) Methotrexate hydrate
|
1, 25 ug/ml
|-
|
OMP_AN:27506
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxorubicin hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31522) Doxorubicin hydrochloride
|
1, 10 ug/ml
|-
|
OMP_AN:27507
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758) EDTA disodium salt dihydrate
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27508
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EGTA
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:30740) EGTA
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27509
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
|
20, 50, 100 ug/ml
|-
|
OMP_AN:27510
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27504) Mitomycin C
|
0.1 ug/ml
|-
|
OMP_AN:27511
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|
50, 250, 1000 uM
|-
|
OMP_AN:27512
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydroxyurea
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:44423) Hydroxyurea
|
1, 5, 10 mM
|-
|
OMP_AN:27513
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|
0.02, 0.05, 0.1 mM
|-
|
OMP_AN:27514
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|
3, 6, 12, 24 uM
|-
|
OMP_AN:27515
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|
1, 5, 20, 50 ug/ml
|-
|
OMP_AN:27516
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:445629) Thiolactomycin
|
1, 5, 50 uM
|-
|
OMP_AN:27517
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nigericin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16760591) Nigericin sodium salt
|
0.1, 1, 5 uM
|-
|
OMP_AN:27518
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|
0.02, 0.1, 1 ug/ml
|-
|
OMP_AN:27519
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Clarithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3732) Clarithromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27520
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27521
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|
1, 5, 20 ug/ml
|-
|
OMP_AN:27522
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxycycline hyclate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34730) Doxycycline hyclate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27523
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Minocycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50697) Minocycline hydrochloride
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27524
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tetracycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:35006) Tetracycline hydrochloride
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27525
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amikacin sulfate salt (disulfate)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)
|
0.05, 0.1, 0.2 ug/ml
|-
|
OMP_AN:27526
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Gentamicin sulfate salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:5312) Gentamicin sulfate salt
|
0.05, 0.1 ug/ml
|-
|
OMP_AN:27527
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spectinomycin dihydrochloride pentahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate
|
4, 6 ug/ml
|-
|
OMP_AN:27528
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32158) Streptomycin sulfate
|
0.05 ug/ml
|-
|
OMP_AN:27529
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|
0.05, 0.1, 0.2, 0.4 ug/ml
|-
|
OMP_AN:27530
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amoxicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2676) Amoxicillin
|
0.25, 0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27531
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ampicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28971) Ampicillin
|
1, 2, 4, 8 ug/ml
|-
|
OMP_AN:27532
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|
0.02, 0.04 ug/ml
|-
|
OMP_AN:27533
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Carbenicillin disodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34609) Carbenicillin disodium
|
0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27534
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27535
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|
6, 12, 18, 24 ug/ml
|-
|
OMP_AN:27536
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|
0.025, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27537
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|
0.03, 0.06, 0.09, 0.12 ug/ml
|-
|
OMP_AN:27538
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
0.5, 5, 40 ug/ml
|-
|
OMP_AN:27539
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|
0.004, 0.006, 0.008 ug/ml
|-
|
OMP_AN:27540
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Levofloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:63598) Levofloxacin
|
0.002 ug/ml
|-
|
OMP_AN:27541
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27542
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:100246) Norfloxacin
|
0.01, 0.02, 0.04 ug/ml
|-
|
OMP_AN:27543
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|
0.1, 0.2, 0.5 ug/ml
|-
|
OMP_AN:27544
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27545
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Isoniazid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:6030) Isoniazid
|
0.2, 1, 1.5 mM
|-
|
OMP_AN:27546
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|
0.2, 1, 10 ug/ml
|-
|
OMP_AN:27547
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydrogen peroxide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16240) Hydrogen peroxide
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27548
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cerulenin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:171741) Cerulenin
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27549
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27550
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ethidium Bromide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4883) Ethidium Bromide
|
2, 10, 50 ug/ml
|-
|
OMP_AN:27551
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|
1, 2 ug/ml
|-
|
OMP_AN:27552
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:10110) Azidothymidine
|
0.5, 1, 2.5 ng/ml
|-
|
OMP_AN:27553
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|
1, 5, 25 ug/ml
|-
|
OMP_AN:27554
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tunicamycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:29699) Tunicamycin
|
1, 3, 7.5 ug/ml
|-
|
OMP_AN:27555
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin disodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162) Fosfomycin disodium salt
|
1 ug/ml
|-
|
OMP_AN:27556
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|
1, 10 ug/ml
|-
|
OMP_AN:27557
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:A22
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:2830968) A22
|
0.5, 2, 5, 15 ug/ml
|-
|
OMP_AN:27558
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:D-Cycloserine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:40009) D-Cycloserine
|
16 ug/ml
|-
|
OMP_AN:27559
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Actinomycin D
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27666 CID:457193) Actinomycin D
|
2.5, 5, 10, 15 ug/ml
|-
|
OMP_AN:27560
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16219032) Bacitracin Zinc Sulfate
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27561
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bleomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34582) Bleomycin sulfate
|
0.1, 0.5, 1, 2 ug/ml
|-
|
OMP_AN:27562
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cecropin B
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16130488) Cecropin B
|
0.1, 0.3 ug/ml
|-
|
OMP_AN:27563
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|
0.1 ug/ml
|-
|
OMP_AN:27564
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phleomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75044) Phleomycin
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27565
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8310) Polymyxin B sulfate
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27566
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Vancomycin HCl hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9932) Vancomycin HCl hydrate
|
10, 20, 50 ug/ml
|-
|
OMP_AN:27567
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Theophylline anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28177) Theophylline anhydrous
|
10, 100 ug/ml
|-
|
OMP_AN:27568
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27569
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EtOH
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16236) EtOH
|
2, 4, 6 %
|-
|
OMP_AN:27570
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|
1, 20, 50 ug/ml
|-
|
OMP_AN:27571
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
0.1, 0.5, 2 ug/ml
|-
|
OMP_AN:27572
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|
5, 20, 50 uM
|-
|
OMP_AN:27573
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|
1, 5, 10, 30 mM
|-
|
OMP_AN:27574
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|
0.2, 1, 5, 10, 18 uM
|-
|
OMP_AN:27575
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Acriflavine (acriflavinium chloride)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
|
2, 10 ug/ml
|-
|
OMP_AN:27576
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamethizole
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9331) Sulfamethizole
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27577
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
50, 100 ug/ml
|-
|
OMP_AN:27578
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cobalt stress-Co(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate
|
0.1, 0.5 mM (LB)
|-
|
OMP_AN:27579
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|
1, 2, 4 mM (LB)
|-
|
OMP_AN:27580
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nickel stress-Ni(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate
|
0.1, 1 mM (LB)
|-
|
OMP_AN:27581
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|
1, 10, 25 ug/ml
|-
|
OMP_AN:27582
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984) SDS
|
0.5, 1, 2, 3, 4 %
|-
|
OMP_AN:27583
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triton X-100
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9750) Triton X-100
|
0.01, 0.03, 0.2 %
|-
|
OMP_AN:27584
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|
0.1, 0.5, 1 %
|-
|
OMP_AN:27585
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cholate sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23679061) Cholate sodium hydrate
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27586
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9177) Deoxycholate sodium
|
0.1, 0.5, 2 %
|-
|
OMP_AN:27587
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27588
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|
0.05 ug/ml
|-
|
OMP_AN:27589
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|
6 + 0.03 ug/ml
|-
|
OMP_AN:27590
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
0.05, 0.2 ug/ml (in 50 mg/ml G6P)
|-
|
OMP_AN:27591
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
0.1 + 50 ug/ml
|-
|
OMP_AN:27592
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
50 ug/ml
|-
|
OMP_AN:27593
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Norepinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:18357) (-)-Norepinephrine
|
100, 1000 uM
|-
|
OMP_AN:27594
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM
|-
|
OMP_AN:27595
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
150, 300, 450, 600 mM
|-
|
OMP_AN:27596
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefaclor
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3478) Cefaclor
|
1, 2, 3 ug/ml
|-
|
OMP_AN:27597
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|
1, 5, 10 uM
|-
|
OMP_AN:27598
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27599
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27600
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27601
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27602
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27603
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27604
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27605
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27606
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27607
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27608
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27609
|

|
OMP:0007962
|
presence of cell population growth during nutrient limitation
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27610
|

|
OMP:0007306
|
presence of inorganic nitrogen source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27611
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27612
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27613
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27614
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27615
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27616
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27617
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27618
|

|
OMP:0005190
|
presence of anaerobic growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Anaerobic
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

|-
|
OMP_AN:27619
|

|
OMP:0007282
|
presence of UV radiation resistance
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
6, 12, 18, 24 sec
|-
|
OMP_AN:27620
|

|
OMP:0007956
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:16C, 18C, or 20C
*medium:LB agar
*medium:Low temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
16C, 18C, or 20C
|-
|
OMP_AN:27621
|

|
OMP:0007950
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:40C, 42C, 43.5C, or 45C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
40, 42, 43.5, 45 C
|-
|
OMP_AN:27622
|

|
OMP:0007945
|
presence of population growth at acidic pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|
pH 4, 4.5, 5, 6
|-
|
OMP_AN:27623
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|
pH 8, 9, 9.5, 10

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.K5be4c9cc7a839&page=32098&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1293 ! Escherichia coli K-12 JW0212

2021-07-01T03:56:16Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="N57dc3adcc255f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0212
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0212-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 lpcA740(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106730 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106730 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8931.N57dc3adcc255f&page=8931&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I57dc3adcc5bf3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:1151
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +lpcA740(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1152
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +lpcA740(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:28160
|

|
OMP:0007954
|
decreased population growth at high temperature
|
Relative to: OMP_AN:27621

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 

*temperature:45C
*medium37C
*medium
|

*temperature:45C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 45 C
*normalized fitness= -4.64
|-
|
OMP_AN:28161
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27556

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= 3.98
|-
|
OMP_AN:28162
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -7.76
|-
|
OMP_AN:28163
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27514

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|

*chemical concentration= 6 uM
*normalized fitness= 3.33
|-
|
OMP_AN:28164
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|

*chemical concentration= 4 mM (LB)
*normalized fitness= -8.9
|-
|
OMP_AN:28165
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27572

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|

*chemical concentration= 5 uM
*normalized fitness= 4.4
|-
|
OMP_AN:28166
|

|
OMP:0007173
|
decreased resistance to host defense peptides
|
Relative to: OMP_AN:27563

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|

*chemical concentration= 0.1 ug/ml
*normalized fitness= -3.9
|-
|
OMP_AN:28167
|

|
OMP:0007376
|
increased resistance to an alkylating agent
|
Relative to: OMP_AN:27502

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|

*chemical concentration= 0.05%
*normalized fitness= 3.61
|-
|
OMP_AN:28168
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.06 ug/ml
*normalized fitness= 3.8
|-
|
OMP_AN:28169
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27570

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|

*chemical concentration= 1 ug/ml
*normalized fitness= 4.94
|-
|
OMP_AN:28170
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 1 mM
*normalized fitness= 3.71
|-
|
OMP_AN:28171
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 25 ug/ml
*normalized fitness= 3.6
|-
|
OMP_AN:28172
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27546

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.93
|-
|
OMP_AN:28173
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -8.92
|-
|
OMP_AN:28174
|

|
OMP:0007902
|
increased resistance to bile acids
|
Relative to: OMP_AN:27584

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|

*chemical concentration= 1 %
*normalized fitness= 4.66
|-
|
OMP_AN:28175
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -17.48
|-
|
OMP_AN:28176
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27536

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 3.92
|-
|
OMP_AN:28177
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27544

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|

*chemical concentration= 1 ug/ml
*normalized fitness= 3.81
|-
|
OMP_AN:28178
|

|
OMP:0007520
|
increased population growth in high osmolarity
|
Relative to: OMP_AN:27595

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|

*chemical concentration= 600 mM
*normalized fitness= 4.14
|-
|
OMP_AN:28179
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -4.48
|-
|
OMP_AN:28180
|

|
OMP:0007011
|
increased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|

*chemical concentration= 9
*normalized fitness= 3.58
|-
|
OMP_AN:28181
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
pH:4.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:4.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 4
*normalized fitness= -11.81
|-
|
OMP_AN:28182
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= 6
*normalized fitness= 4.19
|-
|
OMP_AN:28183
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -3.56

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8931.I57dc3adcc5bf3&page=8931&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1293 ! Escherichia coli K-12 JW0212

2021-07-01T03:55:52Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="N57dc3adcc255f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0212
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0212-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 lpcA740(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106730 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106730 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8931.N57dc3adcc255f&page=8931&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I57dc3adcc5bf3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:1151
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +lpcA740(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1152
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +lpcA740(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:28160
|

|
OMP:0007954
|
decreased population growth at high temperature
|
Relative to: OMP_AN:27621

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 

*temperature:45C
*medium37C
*medium
|

*temperature:45C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 45 C
*normalized fitness= -4.64
|-
|
OMP_AN:28161
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27556

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= 3.98
|-
|
OMP_AN:28162
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -7.76
|-
|
OMP_AN:28163
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27514

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|

*chemical concentration= 6 uM
*normalized fitness= 3.33
|-
|
OMP_AN:28164
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|

*chemical concentration= 4 mM (LB)
*normalized fitness= -8.9
|-
|
OMP_AN:28165
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27572

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|

*chemical concentration= 5 uM
*normalized fitness= 4.4
|-
|
OMP_AN:28166
|

|
OMP:0007173
|
decreased resistance to host defense peptides
|
Relative to: OMP_AN:27563

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|

*chemical concentration= 0.1 ug/ml
*normalized fitness= -3.9
|-
|
OMP_AN:28167
|

|
OMP:0007376
|
increased resistance to an alkylating agent
|
Relative to: OMP_AN:27502

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|

*chemical concentration= 0.05%
*normalized fitness= 3.61
|-
|
OMP_AN:28168
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.06 ug/ml
*normalized fitness= 3.8
|-
|
OMP_AN:28169
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27570

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|

*chemical concentration= 1 ug/ml
*normalized fitness= 4.94
|-
|
OMP_AN:28170
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 1 mM
*normalized fitness= 3.71
|-
|
OMP_AN:28171
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 25 ug/ml
*normalized fitness= 3.6
|-
|
OMP_AN:28172
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27546

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.93
|-
|
OMP_AN:28173
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -8.92
|-
|
OMP_AN:28174
|

|
OMP:0007902
|
increased resistance to bile acids
|
Relative to: OMP_AN:27584

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|

*chemical concentration= 1 %
*normalized fitness= 4.66
|-
|
OMP_AN:28175
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -17.48
|-
|
OMP_AN:28176
|

|
OMP:0006045
|
increased resistance to beta-lactam compound
|
Relative to: OMP_AN:27536

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 3.92
|-
|
OMP_AN:28177
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27544

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|

*chemical concentration= 1 ug/ml
*normalized fitness= 3.81
|-
|
OMP_AN:28178
|

|
OMP:0007520
|
increased population growth in high osmolarity
|
Relative to: OMP_AN:27595

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|

*chemical concentration= 600 mM
*normalized fitness= 4.14
|-
|
OMP_AN:28179
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -4.48
|-
|
OMP_AN:28180
|

|
OMP:0007011
|
increased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|

*chemical concentration= 9
*normalized fitness= 3.58
|-
|
OMP_AN:28181
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
pH:4.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:4.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 4
*normalized fitness= -11.81
|-
|
OMP_AN:28182
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= 6
*normalized fitness= 4.19
|-
|
OMP_AN:28183
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +lpcA740(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -3.56

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8931.I57dc3adcc5bf3&page=8931&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1026 ! Escherichia coli K-12 JW3595

2021-07-01T03:52:25Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Z57c7248ba3f39" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW3595
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW3595-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 rfaF732(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.Z57c7248ba3f39&page=8729&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S57c7248ba7079" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:937
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1141
|

|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:33776
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27518

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|

*chemical concentration= 1 ug/ml
*normalized fitness= -7.97
|-
|
OMP_AN:33777
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -3.69
|-
|
OMP_AN:33778
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27535

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|

*chemical concentration= 24 ug/ml
*normalized fitness= -5.29
|-
|
OMP_AN:33779
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27511

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|

*chemical concentration= 250 uM
*normalized fitness= 3.82
|-
|
OMP_AN:33780
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27520

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.61
|-
|
OMP_AN:33781
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27515

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|

*chemical concentration= 50 ug/ml
*normalized fitness= -7.03
|-
|
OMP_AN:33782
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.03 ug/ml
*normalized fitness= -3.46
|-
|
OMP_AN:33783
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27513

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|

*chemical concentration= 0.1 mM
*normalized fitness= -4.25
|-
|
OMP_AN:33784
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 10 mM
*normalized fitness= -4.15
|-
|
OMP_AN:33785
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 5 ug/ml
*normalized fitness= 5.52
|-
|
OMP_AN:33786
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -4.83
|-
|
OMP_AN:33787
|

|
OMP:0006058
|
increased resistance to aminoglycoside
|
Relative to: OMP_AN:27529

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 4.04
|-
|
OMP_AN:33788
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -15.74
|-
|
OMP_AN:33789
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 0.1 mM
*normalized fitness= 4.11
|-
|
OMP_AN:33790
|

|
OMP:0006041
|
increased resistance to quinolone
|
Relative to: OMP_AN:27539

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|

*chemical concentration= 0.008 ug/ml
*normalized fitness= 3.69
|-
|
OMP_AN:33791
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27541

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|

*chemical concentration= 2 ug/ml
*normalized fitness= -4.7
|-
|
OMP_AN:33792
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -7.32
|-
|
OMP_AN:33793
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
pH:4.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:4.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 4
*normalized fitness= -3.43
|-
|
OMP_AN:33794
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
pH:6.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:6.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 6
*normalized fitness= 6.5
|-
|
OMP_AN:33795
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -5.04

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.S57c7248ba7079&page=8729&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1026 ! Escherichia coli K-12 JW3595

2021-07-01T03:48:53Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Z57c7248ba3f39" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW3595
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW3595-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 rfaF732(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.Z57c7248ba3f39&page=8729&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S57c7248ba7079" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:937
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1141
|

|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:33776
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27518

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|

*chemical concentration= 1 ug/ml
*normalized fitness= -7.97
|-
|
OMP_AN:33777
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -3.69
|-
|
OMP_AN:33778
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27535

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|

*chemical concentration= 24 ug/ml
*normalized fitness= -5.29
|-
|
OMP_AN:33779
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27511

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|

*chemical concentration= 250 uM
*normalized fitness= 3.82
|-
|
OMP_AN:33780
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27520

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.61
|-
|
OMP_AN:33781
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27515

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|

*chemical concentration= 50 ug/ml
*normalized fitness= -7.03
|-
|
OMP_AN:33782
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.03 ug/ml
*normalized fitness= -3.46
|-
|
OMP_AN:33783
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27513

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|

*chemical concentration= 0.1 mM
*normalized fitness= -4.25
|-
|
OMP_AN:33784
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 10 mM
*normalized fitness= -4.15
|-
|
OMP_AN:33785
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 5 ug/ml
*normalized fitness= 5.52
|-
|
OMP_AN:33786
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -4.83
|-
|
OMP_AN:33787
|

|
OMP:0006058
|
increased resistance to aminoglycoside
|
Relative to: OMP_AN:27529

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 4.04
|-
|
OMP_AN:33788
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -15.74
|-
|
OMP_AN:33789
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 0.1 mM
*normalized fitness= 4.11
|-
|
OMP_AN:33790
|

|
OMP:0006041
|
increased resistance to quinolone
|
Relative to: OMP_AN:27539

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|

*chemical concentration= 0.008 ug/ml
*normalized fitness= 3.69
|-
|
OMP_AN:33791
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27541

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|

*chemical concentration= 2 ug/ml
*normalized fitness= -4.7
|-
|
OMP_AN:33792
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -7.32
|-
|
OMP_AN:33793
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= pH 4
*normalized fitness= -3.43
|-
|
OMP_AN:33794
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+rfaF732(del)
<hr>Condition differences: 
pH:6.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:6.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 6
*normalized fitness= 6.5
|-
|
OMP_AN:33795
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -5.04

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.S57c7248ba7079&page=8729&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1026 ! Escherichia coli K-12 JW3595

2021-07-01T03:47:14Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Z57c7248ba3f39" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW3595
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW3595-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 rfaF732(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.Z57c7248ba3f39&page=8729&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S57c7248ba7079" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:937
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1141
|

|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:33776
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27518

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|

*chemical concentration= 1 ug/ml
*normalized fitness= -7.97
|-
|
OMP_AN:33777
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -3.69
|-
|
OMP_AN:33778
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27535

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|

*chemical concentration= 24 ug/ml
*normalized fitness= -5.29
|-
|
OMP_AN:33779
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27511

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|

*chemical concentration= 250 uM
*normalized fitness= 3.82
|-
|
OMP_AN:33780
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27520

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.61
|-
|
OMP_AN:33781
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27515

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|

*chemical concentration= 50 ug/ml
*normalized fitness= -7.03
|-
|
OMP_AN:33782
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.03 ug/ml
*normalized fitness= -3.46
|-
|
OMP_AN:33783
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27513

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|

*chemical concentration= 0.1 mM
*normalized fitness= -4.25
|-
|
OMP_AN:33784
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 10 mM
*normalized fitness= -4.15
|-
|
OMP_AN:33785
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 5 ug/ml
*normalized fitness= 5.52
|-
|
OMP_AN:33786
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -4.83
|-
|
OMP_AN:33787
|

|
OMP:0006058
|
increased resistance to aminoglycoside
|
Relative to: OMP_AN:27529

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 4.04
|-
|
OMP_AN:33788
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -15.74
|-
|
OMP_AN:33789
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 0.1 mM
*normalized fitness= 4.11
|-
|
OMP_AN:33790
|

|
OMP:0006041
|
increased resistance to quinolone
|
Relative to: OMP_AN:27539

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|

*chemical concentration= 0.008 ug/ml
*normalized fitness= 3.69
|-
|
OMP_AN:33791
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27541

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|

*chemical concentration= 2 ug/ml
*normalized fitness= -4.7
|-
|
OMP_AN:33792
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -7.32
|-
|
OMP_AN:33793
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= pH 4
*normalized fitness= -3.43
|-
|
OMP_AN:33794
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= 6
*normalized fitness= 6.5
|-
|
OMP_AN:33795
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -5.04

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.S57c7248ba7079&page=8729&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1026 ! Escherichia coli K-12 JW3595

2021-07-01T03:46:37Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Z57c7248ba3f39" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW3595
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW3595-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 rfaF732(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=108929 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.Z57c7248ba3f39&page=8729&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S57c7248ba7079" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:937
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1141
|

|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rfaF732(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:33776
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27518

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|

*chemical concentration= 1 ug/ml
*normalized fitness= -7.97
|-
|
OMP_AN:33777
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27571

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|

*chemical concentration= 2 ug/ml
*normalized fitness= -3.69
|-
|
OMP_AN:33778
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27535

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|

*chemical concentration= 24 ug/ml
*normalized fitness= -5.29
|-
|
OMP_AN:33779
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27511

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|

*chemical concentration= 250 uM
*normalized fitness= 3.82
|-
|
OMP_AN:33780
|

|
OMP:0006036
|
decreased resistance to macrolide
|
Relative to: OMP_AN:27520

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|

*chemical concentration= 10 ug/ml
*normalized fitness= -3.61
|-
|
OMP_AN:33781
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27515

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|

*chemical concentration= 50 ug/ml
*normalized fitness= -7.03
|-
|
OMP_AN:33782
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27537

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|

*chemical concentration= 0.03 ug/ml
*normalized fitness= -3.46
|-
|
OMP_AN:33783
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27513

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|

*chemical concentration= 0.1 mM
*normalized fitness= -4.25
|-
|
OMP_AN:33784
|

|
OMP:0007249
|
decreased resistance to a chemical
|
Relative to: OMP_AN:27573

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|

*chemical concentration= 10 mM
*normalized fitness= -4.15
|-
|
OMP_AN:33785
|

|
OMP:0007878
|
increased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27553

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|

*chemical concentration= 5 ug/ml
*normalized fitness= 5.52
|-
|
OMP_AN:33786
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27543

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|

*chemical concentration= 0.5 ug/ml
*normalized fitness= -4.83
|-
|
OMP_AN:33787
|

|
OMP:0006058
|
increased resistance to aminoglycoside
|
Relative to: OMP_AN:27529

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= 4.04
|-
|
OMP_AN:33788
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27588

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|

*chemical concentration= 0.05 ug/ml
*normalized fitness= -15.74
|-
|
OMP_AN:33789
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 0.1 mM
*normalized fitness= 4.11
|-
|
OMP_AN:33790
|

|
OMP:0006041
|
increased resistance to quinolone
|
Relative to: OMP_AN:27539

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|

*chemical concentration= 0.008 ug/ml
*normalized fitness= 3.69
|-
|
OMP_AN:33791
|

|
OMP:0006040
|
decreased resistance to quinolone
|
Relative to: OMP_AN:27541

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|

*chemical concentration= 2 ug/ml
*normalized fitness= -4.7
|-
|
OMP_AN:33792
|

|
OMP:0007010
|
decreased population growth at alkaline pH
|
Relative to: OMP_AN:27623

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
pH:8.0?
|
*
*temperature:37C
*medium:LB agar
*medium:TAPS
*pH:8.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= pH 8
*normalized fitness= -7.32
|-
|
OMP_AN:33793
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= pH 4
*normalized fitness= -3.43
|-
|
OMP_AN:33794
|

|
OMP:0007009
|
increased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= 6
*normalized fitness= 6.5
|-
|
OMP_AN:33795
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +rfaF732(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -5.04

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8729.S57c7248ba7079&page=8729&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74819 ! Escherichia coli K-12 MJF400 rpoA341 pTD3

2021-06-29T20:08:14Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="D607f373c749bd" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MJF400 rpoA341 pTD3
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F-, lac-79, galK, rpsL, thi, araC+, leu+, rpoA341, pTD3
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:3147371
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74818 ! Escherichia coli K-12 MJF400 pTD3
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32692.D607f373c749bd&page=32692&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H607f373c7b0f3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37594
|

|
OMP:0007118
|
decreased transcription
|
Relative to: OMP_AN:37593

<hr>Genotype differences: 
+rpoA341
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:1 mM arabinose
*medium:S medium
|
ECO:0007682
|
reporter gene assay evidence used in manual assertion
|
PMID:3147371
|

|
Table 4- expression of Ara-C independent promoters

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32692.H607f373c7b0f3&page=32692&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

[[Category: Derivatives of Escherichia coli K-12 SH321]]

OMP ST:74818 ! Escherichia coli K-12 MJF400 pTD3

2021-06-29T20:07:42Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="G607f36497d1d8" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MJF400 pTD3
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F-, lac-79, galK, rpsL, thi, araC+, leu+, pTD3
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:3147371
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74817 ! Escherichia coli K-12 SH321
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32691.G607f36497d1d8&page=32691&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X607f3649ad66f" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37593
|

|
presence of transcription of gene or operon
|

|
Relative to: OMP_AN:37595

<hr>Genotype differences: 
+araC+ +leu+ +pTD3
<hr>Condition differences: 
temperature:37C?
medium:1 mM arabinose;S medium?
:?
|
*temperature:37C
*medium:1 mM arabinose
*medium:S medium
|
ECO:0007682
|
reporter gene assay evidence used in manual assertion
|
PMID:3147371
|

|
Table 4- expression of Ara-C independent promoters

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32691.X607f3649ad66f&page=32691&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

[[Category: Derivatives of Escherichia coli K-12 SH321]]

OMP ST:8469 ! Escherichia coli K-12 JW5127

2021-06-25T21:18:33Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Q59416a4fa5f3c" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5127
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
ymbA768(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:19160513
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14762.Q59416a4fa5f3c&page=14762&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J59416a4fad962" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:35728
|

|
OMP:0007896
|
decreased resistance to a surfactant
|
Relative to: OMP_AN:27581

<hr>Genotype differences: 
+ymbA768(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|

*chemical concentration= 10 ug/ml
*normalized fitness= -4.48
|-
|
OMP_AN:35729
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+ymbA768(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -4.09

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14762.J59416a4fad962&page=14762&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:8469 ! Escherichia coli K-12 JW5127

2021-06-25T21:17:54Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="Q59416a4fa5f3c" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5127
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
ymbA768(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:19160513
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14762.Q59416a4fa5f3c&page=14762&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J59416a4fad962" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:35728
|

|
OMP:0007896
|
decreased resistance to a surfactant
|
Relative to: OMP_AN:27581

<hr>Genotype differences: 
+lacZ4787(del)( +ymbA768(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|

*chemical concentration= 10 ug/ml
*normalized fitness= -4.48
|-
|
OMP_AN:35729
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27591

<hr>Genotype differences: 
+lacZ4787(del)( +ymbA768(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|

*chemical concentration= 0.1 + 50 ug/ml
*normalized fitness= -4.09

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14762.J59416a4fad962&page=14762&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:899 ! Escherichia coli K-12 MG1655 deltarbsK

2021-06-21T22:26:09Z

Siegele: /* References */

__TOC__

==Strain Summary==
<protect>

{| id="S55bedde8193db" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
MG1655 deltarbsK
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:17709419
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6771.S55bedde8193db&page=6771&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:Strains that need OMP_ST accessions]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X55bedde81cbf3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6771.X55bedde81cbf3&page=6771&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

[[Category:Derivative of OMP ST:159 ! Escherichia coli K-12 MG1655]]

OMP ST:899 ! Escherichia coli K-12 MG1655 deltarbsK

2021-06-21T22:25:40Z

Siegele:

__TOC__

==Strain Summary==
<protect>

{| id="S55bedde8193db" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
MG1655 deltarbsK
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:17709419
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6771.S55bedde8193db&page=6771&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:Strains that need OMP_ST accessions]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X55bedde81cbf3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6771.X55bedde81cbf3&page=6771&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

[[Derivative of OMP ST:159 ! Escherichia coli K-12 MG1655]]

Category:Derivative of OMP ST:159 ! Escherichia coli K-12 MG1655

2021-06-21T22:24:20Z

Siegele: Created page with ".."

OMP ST:898 ! Escherichia coli K-12 MG1655 deltafucAO

2021-06-21T22:24:02Z

Siegele:

__TOC__

==Strain Summary==
<protect>

{| id="E55bed6f4aeec8" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
MG16555 deltafucAO
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 DEfucAO
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:17709419
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6770.E55bed6f4aeec8&page=6770&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D55bed6f4bd6e0" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:358
|

|
OMP:0007257
|

|
Relative to: OMP_AN:357

<hr>Genotype differences: 
+DEfucAO
<hr>Condition differences: 
no differences
|

|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:361
|

|
OMP:0000282
|
increased growth rate
|
Relative to: OMP_AN:360

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:M9 minimal media 0.15% ribose 0.05% fucoseM9 minimal media 0.15% ribose
|
medium:M9 minimal media 0.15% ribose 0.05% fucose
|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:360
|

|
OMP:0007156
|
growth rate phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:M9 minimal media 0.15% ribose
|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6770.D55bed6f4bd6e0&page=6770&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

[[Category:Derivative of OMP ST:159 ! Escherichia coli K-12 MG1655]]

OMP ST:898 ! Escherichia coli K-12 MG1655 deltafucAO

2021-06-21T22:23:08Z

Siegele: Table edited by $2 via TableEdit

OMP ST:74825 ! Escherichia coli K-12 M31

2021-06-21T21:50:55Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="O60d0fa646994b" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 M31
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:8244969
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.O60d0fa646994b&page=32704&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C60d0fa64e4130" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37600
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:37599

<hr>Genotype differences: 
+stl^s
<hr>Condition differences: 
medium:streptolydigin (1 ug/ml)streptolydigin (20 ug/ml)
|
*temperature:37C
*medium:LB
*medium:streptolydigin (1 ug/ml)
|
ECO:0007699
|
cell growth assay evidence used in manual assertion
|
PMID:8244969
|
CHEBI:45773
streptolydigin
|
The parent strain was subjected to two rounds of ethyl methanesulfonate mutagenesis and then enriched for stl^s mutants in the presence of D-cycloserine, which kills growing cells.

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.C60d0fa64e4130&page=32704&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74825 ! Escherichia coli K-12 M31

2021-06-21T21:20:46Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="O60d0fa646994b" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 M31
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:8244969
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.O60d0fa646994b&page=32704&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C60d0fa64e4130" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37600
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:37599

<hr>Genotype differences: 
+stl^s
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:LB
*medium:streptolydigin (20 ug/ml)
|
ECO:0007699
|
cell growth assay evidence used in manual assertion
|
PMID:8244969
|
CHEBI:45773
streptolydigin
|
The parent strain was subjected to two rounds of ethyl methanesulfonate mutagenesis and then enriched for stl^s mutants in the presence of D-cycloserine, which kills growing cells.

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.C60d0fa64e4130&page=32704&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:159 ! Escherichia coli K-12 MG1655

2021-06-21T21:12:38Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="U55ba5ea3a81a6" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
CGSC #6300, ATCC 47076
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center]
*PMID:8501045
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center], [http://www.atcc.org/products/all/47076.aspx#generalinformation ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.U55ba5ea3a81a6&page=6753&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y55ba5ea3ab97c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:357
|

|
OMP:0007253
|
presence of host colonization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:1353
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17391508
|

|

|-
|
OMP_AN:7646
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7647
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7648
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7649
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7650
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7646

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7651
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7647

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7652
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7648

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7653
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7649

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7675
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7676
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Honey (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Honey (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7677
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17234 glucose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7678
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28757 fructose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7679
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17992 sucrose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7680
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Lactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Lactose (0.5%)
|
ECO:0000182
|

|
PMID:22047137
|
CHEBI:17716 lactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7681
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Galactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Galactose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28260 galactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7682
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Methylglyoxal (0.001%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Methylglyoxal (0.001%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17158 methylglyoxal
|
Crystal violet biofilm assay
|-
|
OMP_AN:7683
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:H2O2 (0.0005%)?
|
*other:96-well plate
*temperature:37C
*medium:H2O2 (0.0005%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:16240 H2O2
|
Crystal violet biofilm assay
|-
|
OMP_AN:8278
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
*medium:NaCl (1%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:8307
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:27250
|

|
OMP:0007181
|
presence of anaerobic respiration
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:H2O2 (5 uM) as terminal electron acceptor
*other:anoxic
*temperature:37C
*medium:glycerol minimal medium
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:28696311
|
CHEBI:16240 hydrogen peroxide
|
Figure 8
|-
|
OMP_AN:27302
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:27303
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:20C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:37557
|

|
presence of growth at acidic pH
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:24 h incubation
*pH:4.50
*temperature:30C
*medium:LB
|
ECO:0001847
|

|
PMID:27826291
|

|
table 3
|-
|
OMP_AN:37599
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB
*medium:streptolydigin (20 ug/ml)
|
ECO:0007699
|
cell growth assay evidence used in manual assertion
|
PMID:8244969
|
CHEBI:45773
streptolydigin
|
E. coli K-12 is naturally resistant to streptolydigin, presumably because the drug is unable to cross the outer membrane.

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.Y55ba5ea3ab97c&page=6753&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74825 ! Escherichia coli K-12 M31

2021-06-21T20:45:58Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="O60d0fa646994b" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 M31
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:8244969
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.O60d0fa646994b&page=32704&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C60d0fa64e4130" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.C60d0fa64e4130&page=32704&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74825 ! Escherichia coli K-12 M31

2021-06-21T20:45:25Z

Siegele: make strain info table SpecialNewPage

__TOC__

==Strain Summary==


{| id="O60d0fa646994b" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 M31
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 stl^s
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:8244969
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.O60d0fa646994b&page=32704&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C60d0fa64e4130" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32704.C60d0fa64e4130&page=32704&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74825 ! Escherichia coli K-12 M31

2021-06-21T20:45:24Z

Siegele: Page creation by SpecialNewPage

new strain page placeholder

Talk:Main Page

2021-06-21T20:42:13Z

Siegele: /* Rss feed */ new section

== Rss feed ==

I removed the link to the rss feed from the front page until we get it running again. The code removed was:
<nowiki><rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss></nowiki> [[User:Siegele|Siegele]] ([[User talk:Siegele|talk]]) 15:42, 21 June 2021 (CDT)

Main Page

2021-06-21T20:40:18Z

Siegele: /* News */

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===

=====OMP June, 2021 Release=====
We are pleased to announce the June, 2020 release of the Ontology of Microbial Phenotypes (OMP) is available at:
https://github.com/microbialphenotypes/OMP-ontology/tree/master

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

OMP ST:1018 ! Escherichia coli K-12 JW0145

2021-06-08T02:37:13Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H57c5bfe9013c4" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0145
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0145-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 mrcB765(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.H57c5bfe9013c4&page=8721&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G57c5bfe9049cd" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:930
|

|
OMP:0007092
|
decreased motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del) +mrcB765(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:28066
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CuCl2 (4 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) CuCl2 dihydrate
|
normalized fitness= -3.56
|-
|
OMP_AN:28067
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose (0.2%)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|
normalized fitness= -3.19
|-
|
OMP_AN:28068
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose (0.2%)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|
normalized fitness= -3.19
|-
|
OMP_AN:28069
|

|
OMP:0007833
|
decreased resistance to sulfonamde
|
Relative to: OMP_AN:27577

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine (50 ug/ml)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
normalized fitness= -3.44
|-
|
OMP_AN:28070
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil (1 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 1 mM
*normalized fitness= 3.29
|-
|
OMP_AN:28071
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27589

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|

*chemical concentration= 6 + 0.03 ug/ml
*normalized fitness= -11.76
|-
|
OMP_AN:28072
|

|
OMP:0007521
|
decreased population growth in high osmolarity
|
Relative to: OMP_AN:27595

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:NaCl (450 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
normalized fitness= -3.6
|-
|
OMP_AN:28073
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27538

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin (5 ug/ml)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
normalized fitness= -4.33
|-
|
OMP_AN:28074
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
pH:4.0?
|
*
*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
*pH:4.0
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
normalized fitness= -7.63
|-
|
OMP_AN:28075
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27500

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (0.4 ug/ml)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
normalized fitness= -3.28
|-
|
OMP_AN:28076
|

|
OMP:0005098
|
decreased resistance to UV radiation
|
Relative to: OMP_AN:27619

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
UV treatment for 18 sec
normalized fitness= -5.17

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.G57c5bfe9049cd&page=8721&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1018 ! Escherichia coli K-12 JW0145

2021-06-08T02:27:09Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H57c5bfe9013c4" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0145
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0145-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 mrcB765(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.H57c5bfe9013c4&page=8721&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G57c5bfe9049cd" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:930
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +mrcB765(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:28066
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:CuCl2 (4 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) CuCl2 dihydrate
|
normalized fitness= -3.56
|-
|
OMP_AN:28067
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose (0.2%)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|
normalized fitness= -3.19
|-
|
OMP_AN:28068
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose (0.2%)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -3.19
|-
|
OMP_AN:28069
|

|
OMP:0007833
|
decreased resistance to sulfonamde
|
Relative to: OMP_AN:27577

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|

*chemical concentration= 50 ug/ml
*normalized fitness= -3.44
|-
|
OMP_AN:28070
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil (1 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 1 mM
*normalized fitness= 3.29
|-
|
OMP_AN:28071
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27589

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|

*chemical concentration= 6 + 0.03 ug/ml
*normalized fitness= -11.76
|-
|
OMP_AN:28072
|

|
OMP:0007521
|
decreased population growth in high osmolarity
|
Relative to: OMP_AN:27595

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:NaCl (450 mM)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
normalized fitness= -3.6
|-
|
OMP_AN:28073
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27538

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin (5 ug/ml)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
normalized fitness= -4.33
|-
|
OMP_AN:28074
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= pH 4
*normalized fitness= -7.63
|-
|
OMP_AN:28075
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27500

<hr>Genotype differences: 
+mrcB765(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|

*chemical concentration= 0.4 ug/ml
*normalized fitness= -3.28
|-
|
OMP_AN:28076
|

|
OMP:0005098
|
decreased resistance to UV radiation
|
Relative to: OMP_AN:27619

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 18 sec
*normalized fitness= -5.17

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.G57c5bfe9049cd&page=8721&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1018 ! Escherichia coli K-12 JW0145

2021-06-08T00:27:35Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H57c5bfe9013c4" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0145
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0145-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 mrcB765(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=106696 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.H57c5bfe9013c4&page=8721&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="G57c5bfe9049cd" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:930
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +mrcB765(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:28066
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27579

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|

*chemical concentration= 4 mM (LB)
*normalized fitness= -3.56
|-
|
OMP_AN:28067
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -3.19
|-
|
OMP_AN:28068
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -3.19
|-
|
OMP_AN:28069
|

|
OMP:0007833
|
decreased resistance to sulfonamde
|
Relative to: OMP_AN:27577

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|

*chemical concentration= 50 ug/ml
*normalized fitness= -3.44
|-
|
OMP_AN:28070
|

|
OMP:0007250
|
increased resistance to a chemical
|
Relative to: OMP_AN:27568

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|

*chemical concentration= 1 mM
*normalized fitness= 3.29
|-
|
OMP_AN:28071
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27589

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|

*chemical concentration= 6 + 0.03 ug/ml
*normalized fitness= -11.76
|-
|
OMP_AN:28072
|

|
OMP:0007521
|
decreased population growth in high osmolarity
|
Relative to: OMP_AN:27595

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|

*chemical concentration= 450 mM
*normalized fitness= -3.6
|-
|
OMP_AN:28073
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:27538

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|

*chemical concentration= 5 ug/ml
*normalized fitness= -4.33
|-
|
OMP_AN:28074
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:27622

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|

*chemical concentration= pH 4
*normalized fitness= -7.63
|-
|
OMP_AN:28075
|

|
OMP:0007879
|
decreased resistance to an antimicrobial agent
|
Relative to: OMP_AN:27500

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|

*chemical concentration= 0.4 ug/ml
*normalized fitness= -3.28
|-
|
OMP_AN:28076
|

|
OMP:0005098
|
decreased resistance to UV radiation
|
Relative to: OMP_AN:27619

<hr>Genotype differences: 
+lacZ4787(del)( +mrcB765(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

*chemical concentration= 18 sec
*normalized fitness= -5.17

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8721.G57c5bfe9049cd&page=8721&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-08T00:24:59Z

Siegele: Table edited by $2 via TableEdit

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-08T00:22:13Z

Siegele: Table edited by $2 via TableEdit

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T23:54:13Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:[[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T23:45:04Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:[[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28212
|
NOT
|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27611

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T06:40:59Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:[[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28212
|
NOT
|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27611

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007074
|
increased growth factor requirement
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T06:36:34Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:[[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28212
|
NOT
|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27611

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+proA761(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T06:34:04Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:[[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28212
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
OMP_AN:27611
|

*temperature:
37C
*medium:M9
*medium:Sodium Acetate anhydrous

|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:
21185072

|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:71354 ! Escherichia coli K-12 JW0233

2021-06-07T06:32:59Z

Siegele: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="I5b510527265b0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW0233
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW0233-2
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 proA761(del)::FRT-kan-FRT
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*PMID:16738554
*[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc2.biology.yale.edu/Strain.php?ID=106749 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent: [[OMP ST:800 ! Escherichia coli K-12 BW25113]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.I5b510527265b0&page=28648&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E5b510527273db" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:28211
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27601

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28212
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
OMP_AN:27611
|

*temperature:
37C
*medium:M9
*medium:Sodium Acetate anhydrous

|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:
21185072

|
towards some (CHEBI:32954) Sodium Acetate anhydrous
|

*chemical concentration= 0.6%
*normalized fitness= -9.5
|-
|
OMP_AN:28213
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27606

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28214
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27616

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine
|

*chemical concentration= 0.15%
*normalized fitness= -15.59
|-
|
OMP_AN:28215
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27602

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28216
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27612

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride
|

*chemical concentration= 0.2%
*normalized fitness= -15.4
|-
|
OMP_AN:28217
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27603

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28218
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27613

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous
|

*chemical concentration= 0.2%
*normalized fitness= -16.79
|-
|
OMP_AN:28219
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27604

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28220
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27614

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Glycerol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol
|

*chemical concentration= 0.4%
*normalized fitness= -20.78
|-
|
OMP_AN:28221
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27605

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28222
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27615

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate
|

*chemical concentration= 0.1%
*normalized fitness= -15.46
|-
|
OMP_AN:28223
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27600

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28224
|

|
OMP:0007032
|
decreased utilization of inorganic nitrogen source
|
Relative to: OMP_AN:27610

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl
|

*chemical concentration= 9.5mm
*normalized fitness= -23.94
|-
|
OMP_AN:28225
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27607

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28226
|

|
OMP:0007070
|
decreased organic carbon source utilization
|
Relative to: OMP_AN:27617

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:M9
*medium:Succinic acid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid
|

*chemical concentration= 0.3%
*normalized fitness= -10.5
|-
|
OMP_AN:28227
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27598

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28228
|

|
OMP:0007886
|
decreased resistance to a metal
|
Relative to: OMP_AN:27608

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride
|

*chemical concentration= 1mM (MOPS; normal 100uM)
*normalized fitness= -24.76
|-
|
OMP_AN:28229
|

|
OMP:0007075
|
decreased growth factor requirement
|
Relative to: OMP_AN:27599

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42
|-
|
OMP_AN:28230
|

|
OMP:0007937
|
decreased resistance to nutrient limitation
|
Relative to: OMP_AN:27609

<hr>Genotype differences: 
+lacZ4787(del)( +proA761(del) -lacZ4787(del)
<hr>Condition differences: 
no differences
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O
|

*chemical concentration= 2uM (MOPS; normal 100uM)
*normalized fitness= -13.42

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28648.E5b510527273db&page=28648&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>