OMPwiki - User contributions [en]

Main Page

2020-12-23T15:51:52Z

Peterwu: /* Misc. */

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:RNAPchemicalgenetics|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===
<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2020-07-29T04:10:40Z

Peterwu: /* Misc. */

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:ShiverSpecialpage|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:CamposSpecialpage|Campos et al. (2018) Genomewide phenotypic analysis of growth, cell morphogenesis, and cell cycle events in ''Escherichia coli''. Mol Syst Biol. 14(6):e7573.]]
*[[Special:Ecolispecialpage_price|Price et al. (2018) Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. 557(7706):503-509.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.

[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===
<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2020-06-23T03:03:23Z

Peterwu:

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:ShiverSpecialpage|Shiver et al. (2020) Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs. BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.
[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===
<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2020-05-16T12:30:12Z

Peterwu:

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:ShiverSpecialpage|Shiver et al. (2020) (title for the E. coli RNA polymerase phenotypic landscape). BioRxiv]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.
[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===
<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

Main Page

2020-05-16T12:28:00Z

Peterwu:

__NOTOC__
<center>Questions? Contact us at {{Email}}.</center>

{| style="width:100%; background:#fcfcfc; border:1px solid #ccc; border-spacing:10px;"
| colspan=3 style="width:55%; color:#000" |

<div style="font-size:172%; border:none; margin:0; padding:.1em; color:#000;">Welcome to the [[OMPWiki:About|Microbial Phenotypes Wiki]],</div>
Web-based community resource designed to display microbial phenotypes and the methods used to study them.

|-style="vertical-align:top;"



|
== Phenotypes (OMP) ==
* [[:Category:OMP:0000000_!_microbial_phenotype|Browse OMP]]
* [https://github.com/microbialphenotypes/OMP-ontology Latest ontology versions]
* [https://github.com/microbialphenotypes/OMP-ontology/issues Term issue tracker]

|
== Evidence & Conclusion Ontology ==
* [[:Category:ECO:0000000_!_evidence|Browse ECO]]
* [https://github.com/evidenceontology/evidenceontology/issues ECO issue tracker]
* [https://github.com/evidenceontology/evidenceontology ECO main repository]
* [http://evidenceontology.org Official ECO website]
* [http://bioportal.bioontology.org/ontologies/1012 ECO on BioPortal]
|
== Misc. ==
[[OmpWiki:Membership|Membership]]
;Data browsers
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:ECGASpecialpage|Xia J et al. (2019) Bacteria-to-human protein networks reveal origins of endogenous DNA damage. Cell. 176:127-143.e24.]]
*[[Special:Specialpeterspage|Peters JM et al. (2016) A comprehensive, CRISPR-based functional analysis of essential genes in bacteria. Cell. 165:1493-1506.]]
*[[Special:Ecolispecialpage|Nichols et al. (2010) Phenotypic landscape of a bacterial cell. Cell. 144:143-56.]] Fitness of 3,979 ''E. coli'' mutants in 324 growth conditions.
[https://github.com/microbialphenotypes/OMPwiki/issues Bug tracker for OMPwiki]

|}


{| style=" width:100%; font-size:115%; border-spacing:10px;"
|-
|width="60%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|

== What are microbial phenotypes & why do they need an ontology? ==

A phenotype is the expression of a genotype (i.e. the full genetic complement of an organism) in a given environment. For example, eye color, number of seeds per pod,
and coat color are phenotypic traits that can be observed in ﬂies, lupines, and ponies, respectively. Within an individual organism, both changes in genetic makeup, such as from bacterial conjugation, and variation in gene expression can result in different phenotypes under similar environmental conditions. Conversely, environmental variation can lead to different outcomes for genetically identical organisms, through variable gene expression. Myriad genetically and taxonomically diverse microbes exhibit countless variability in their morphological and physiological traits, both within and among species. Oftentimes these result in unique and exquisite manifestations, such as the symbiosis between the bioluminescent ''Vibrio ﬁscheri'' bacterium and its squid host ''Euprymna scolopes''. Characterization of phenotypes is critically important for medical microbial identiﬁcation, and many unique biotechnological applications of microbes are rooted in phenotypes. Genetic manipulation with associated phenotypic characterization remains an important tool for determining protein function in microorganisms amenable to manipulation, such as ''Escherichia coli''. To facilitate research in all of these areas, we are developing the Ontology of Microbial Phenotypes to allow for standardized capture of essential phenotypic information.

|width="40%" style ="background:#fcfcfc; border:1px solid #ccc; padding:10px;" align="left" valign="top"|
===News===
<rss>https://microbialphenotypes.org/blog/index.php/feed/|max=3</rss>

=== Search Pages of Interest ===
*[[OMP_summary|Summary table]] of all entries in the phenotype tables.
*We are starting to collect [[Categories to Search|information on methods]]. You can contribute to OMP by adding methods and/or references.

OMP ST:74718 ! Escherichia coli K-12 WM1659

2020-01-23T00:46:12Z

Peterwu: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="D5e28ec7148b6a" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 WM1659
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 lacU169 Leu+ ftsA*(ftsA[C856T])
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: 83333
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 lacU169 Leu+ ftsA*(ftsA[C856T])
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:29941428
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32630.D5e28ec7148b6a&page=32630&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M5e28ec7189c3a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32630.M5e28ec7189c3a&page=32630&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74718 ! Escherichia coli K-12 WM1659

2020-01-23T00:44:33Z

Peterwu: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74718 ! Escherichia coli K-12 WM1659

2020-01-23T00:44:33Z

Peterwu: make strain info table SpecialNewPage

__TOC__

==Strain Summary==


{| id="D5e28ec7148b6a" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 WM1659
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
MG1655 lacU169 Leu+ ftsA*(ftsA[C856T])
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID: 29941428
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32630.D5e28ec7148b6a&page=32630&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M5e28ec7189c3a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32630.M5e28ec7189c3a&page=32630&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-10-10T19:55:51Z

Peterwu: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="S5be4c9cc6cf4f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:21185072
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.S5be4c9cc6cf4f&page=32098&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.

Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.

The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins (<ref name='PMID:19734312'/>). See the original paper for additional details about the strains used in the screen.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5be4c9cc7a839" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27500
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
0.1, 0.2, 0.3, 0.4 ug/ml
|-
|
OMP_AN:27501
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|
0.4, 0.8, 1.2 mM
|-
|
OMP_AN:27502
|

|
OMP:0007373
|
resistant to alkylating agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|
0.05%
|-
|
OMP_AN:27503
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nitrofurantoin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:71415) Nitrofurantoin
|
0.1, 0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27504
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Novobiocin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31924) Novobiocin sodium salt
|
4, 6, 8, 10, 12, 30 ug/ml
|-
|
OMP_AN:27505
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Methotrexate hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:165528) Methotrexate hydrate
|
1, 25 ug/ml
|-
|
OMP_AN:27506
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxorubicin hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31522) Doxorubicin hydrochloride
|
1, 10 ug/ml
|-
|
OMP_AN:27507
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758) EDTA disodium salt dihydrate
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27508
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EGTA
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:30740) EGTA
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27509
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
|
20, 50, 100 ug/ml
|-
|
OMP_AN:27510
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27504) Mitomycin C
|
0.1 ug/ml
|-
|
OMP_AN:27511
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|
50, 250, 1000 uM
|-
|
OMP_AN:27512
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydroxyurea
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:44423) Hydroxyurea
|
1, 5, 10 mM
|-
|
OMP_AN:27513
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|
0.02, 0.05, 0.1 mM
|-
|
OMP_AN:27514
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|
3, 6, 12, 24 uM
|-
|
OMP_AN:27515
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|
1, 5, 20, 50 ug/ml
|-
|
OMP_AN:27516
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:445629) Thiolactomycin
|
1, 5, 50 uM
|-
|
OMP_AN:27517
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nigericin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16760591) Nigericin sodium salt
|
0.1, 1, 5 uM
|-
|
OMP_AN:27518
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|
0.02, 0.1, 1 ug/ml
|-
|
OMP_AN:27519
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Clarithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3732) Clarithromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27520
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27521
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|
1, 5, 20 ug/ml
|-
|
OMP_AN:27522
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxycycline hyclate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34730) Doxycycline hyclate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27523
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Minocycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50697) Minocycline hydrochloride
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27524
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tetracycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:35006) Tetracycline hydrochloride
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27525
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amikacin sulfate salt (disulfate)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)
|
0.05, 0.1, 0.2 ug/ml
|-
|
OMP_AN:27526
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Gentamicin sulfate salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:5312) Gentamicin sulfate salt
|
0.05, 0.1 ug/ml
|-
|
OMP_AN:27527
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spectinomycin dihydrochloride pentahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate
|
4, 6 ug/ml
|-
|
OMP_AN:27528
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32158) Streptomycin sulfate
|
0.05 ug/ml
|-
|
OMP_AN:27529
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|
0.05, 0.1, 0.2, 0.4 ug/ml
|-
|
OMP_AN:27530
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amoxicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2676) Amoxicillin
|
0.25, 0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27531
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ampicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28971) Ampicillin
|
1, 2, 4, 8 ug/ml
|-
|
OMP_AN:27532
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|
0.02, 0.04 ug/ml
|-
|
OMP_AN:27533
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Carbenicillin disodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34609) Carbenicillin disodium
|
0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27534
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27535
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|
6, 12, 18, 24 ug/ml
|-
|
OMP_AN:27536
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|
0.025, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27537
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|
0.03, 0.06, 0.09, 0.12 ug/ml
|-
|
OMP_AN:27538
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
0.5, 5, 40 ug/ml
|-
|
OMP_AN:27539
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|
0.004, 0.006, 0.008 ug/ml
|-
|
OMP_AN:27540
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Levofloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:63598) Levofloxacin
|
0.002 ug/ml
|-
|
OMP_AN:27541
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27542
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:100246) Norfloxacin
|
0.01, 0.02, 0.04 ug/ml
|-
|
OMP_AN:27543
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|
0.1, 0.2, 0.5 ug/ml
|-
|
OMP_AN:27544
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27545
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Isoniazid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:6030) Isoniazid
|
0.2, 1, 1.5 mM
|-
|
OMP_AN:27546
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|
0.2, 1, 10 ug/ml
|-
|
OMP_AN:27547
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydrogen peroxide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16240) Hydrogen peroxide
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27548
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cerulenin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:171741) Cerulenin
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27549
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27550
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ethidium Bromide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4883) Ethidium Bromide
|
2, 10, 50 ug/ml
|-
|
OMP_AN:27551
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|
1, 2 ug/ml
|-
|
OMP_AN:27552
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:10110) Azidothymidine
|
0.5, 1, 2.5 ng/ml
|-
|
OMP_AN:27553
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|
1, 5, 25 ug/ml
|-
|
OMP_AN:27554
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tunicamycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:29699) Tunicamycin
|
1, 3, 7.5 ug/ml
|-
|
OMP_AN:27555
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin disodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162) Fosfomycin disodium salt
|
1 ug/ml
|-
|
OMP_AN:27556
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|
1, 10 ug/ml
|-
|
OMP_AN:27557
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:A22
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:2830968) A22
|
0.5, 2, 5, 15 ug/ml
|-
|
OMP_AN:27558
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:D-Cycloserine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:40009) D-Cycloserine
|
16 ug/ml
|-
|
OMP_AN:27559
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Actinomycin D
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27666 CID:457193) Actinomycin D
|
2.5, 5, 10, 15 ug/ml
|-
|
OMP_AN:27560
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16219032) Bacitracin Zinc Sulfate
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27561
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bleomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34582) Bleomycin sulfate
|
0.1, 0.5, 1, 2 ug/ml
|-
|
OMP_AN:27562
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cecropin B
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16130488) Cecropin B
|
0.1, 0.3 ug/ml
|-
|
OMP_AN:27563
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|
0.1 ug/ml
|-
|
OMP_AN:27564
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phleomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75044) Phleomycin
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27565
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8310) Polymyxin B sulfate
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27566
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Vancomycin HCl hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9932) Vancomycin HCl hydrate
|
10, 20, 50 ug/ml
|-
|
OMP_AN:27567
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Theophylline anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28177) Theophylline anhydrous
|
10, 100 ug/ml
|-
|
OMP_AN:27568
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27569
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EtOH
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16236) EtOH
|
2, 4, 6 %
|-
|
OMP_AN:27570
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|
1, 20, 50 ug/ml
|-
|
OMP_AN:27571
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
0.1, 0.5, 2 ug/ml
|-
|
OMP_AN:27572
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|
5, 20, 50 uM
|-
|
OMP_AN:27573
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|
1, 5, 10, 30 mM
|-
|
OMP_AN:27574
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|
0.2, 1, 5, 10, 18 uM
|-
|
OMP_AN:27575
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Acriflavine (acriflavinium chloride)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
|
2, 10 ug/ml
|-
|
OMP_AN:27576
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamethizole
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9331) Sulfamethizole
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27577
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
50, 100 ug/ml
|-
|
OMP_AN:27578
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cobalt stress-Co(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate
|
0.1, 0.5 mM (LB)
|-
|
OMP_AN:27579
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|
1, 2, 4 mM (LB)
|-
|
OMP_AN:27580
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nickel stress-Ni(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate
|
0.1, 1 mM (LB)
|-
|
OMP_AN:27581
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|
1, 10, 25 ug/ml
|-
|
OMP_AN:27582
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984) SDS
|
0.5, 1, 2, 3, 4 %
|-
|
OMP_AN:27583
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triton X-100
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9750) Triton X-100
|
0.01, 0.03, 0.2 %
|-
|
OMP_AN:27584
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|
0.1, 0.5, 1 %
|-
|
OMP_AN:27585
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cholate sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23679061) Cholate sodium hydrate
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27586
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9177) Deoxycholate sodium
|
0.1, 0.5, 2 %
|-
|
OMP_AN:27587
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27588
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|
0.05 ug/ml
|-
|
OMP_AN:27589
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|
6 + 0.03 ug/ml
|-
|
OMP_AN:27590
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
0.05, 0.2 ug/ml (in 50 mg/ml G6P)
|-
|
OMP_AN:27591
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
0.1 + 50 ug/ml
|-
|
OMP_AN:27592
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
50 ug/ml
|-
|
OMP_AN:27593
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Norepinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:18357) (-)-Norepinephrine
|
100, 1000 uM
|-
|
OMP_AN:27594
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM
|-
|
OMP_AN:27595
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
150, 300, 450, 600 mM
|-
|
OMP_AN:27596
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefaclor
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3478) Cefaclor
|
1, 2, 3 ug/ml
|-
|
OMP_AN:27597
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|
1, 5, 10 uM
|-
|
OMP_AN:27598
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27599
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27600
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27601
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27602
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27603
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27604
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27605
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27606
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27607
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27608
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27609
|

|
OMP:0007962
|
presence of cell population growth during nutrient limitation
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27610
|

|
OMP:0007306
|
presence of inorganic nitrogen source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27611
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27612
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27613
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27614
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27615
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27616
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27617
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27618
|

|
OMP:0005190
|
presence of anaerobic growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Anaerobic
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

|-
|
OMP_AN:27619
|

|
OMP:0007282
|
presence of UV radiation resistance
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
6, 12, 18, 24 sec
|-
|
OMP_AN:27620
|

|
OMP:0007956
|
presence of population growth at low temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Low temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
16, 18, 20 C
|-
|
OMP_AN:27621
|

|
OMP:0007950
|
presence of population growth at high temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
40, 42, 43.5, 45 C
|-
|
OMP_AN:27622
|

|
OMP:0007945
|
presence of population growth at acidic pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|
pH 4, 4.5, 5, 6
|-
|
OMP_AN:27623
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|
pH 8, 9, 9.5, 10

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.K5be4c9cc7a839&page=32098&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-09-25T22:01:00Z

Peterwu: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="S5be4c9cc6cf4f" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)::rrnB-3 rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:21185072
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.S5be4c9cc6cf4f&page=32098&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
OMP_ST:74667 was created to use as the reference (or control) strain for the high-throughput phenotype studies of Nichols RJ et al. (2011) Cell 144:143-156. In this study, fitness in the various growth conditions was determined based on the sizes of spot colonies. Colony sizes were normalized in two steps. First, colony sizes on each individual plate were normalized to correct for systematic differences. Second, the colony sizes for each strain were normalized based on the median colony size of that strain in all 324 conditions.

Of the 4,602 strains that were screened, 4,502 strains were derivatives of E. coli K-12 BW25113; the remaining 100 strains were derivative of E. coli K-12 MG1655. For this reason, we have used the genotype of BW25113 as the genotype for the virtual reference strain.

The collection of mutants that was screened included 4334 deletions of non-essential genes (the Keio Collection ([1]), 148 SPA-tagged derivatives of essential genes ([2] [3]), 9 point-mutant alleles of essential genes (as well as the corresponding control strains that carried the same antibioticR marker linked to the wild-type allele), 2 truncations of essential genes, and 100 deletions of small RNAs and small proteins (<ref name='PMID:19734312'/>). See the original paper for additional details about the strains used in the screen.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5be4c9cc7a839" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27248
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984)
SDS
|
concentrations of SDS used were (0.5, 1, 2, 3, or 4%)
|-
|
OMP_AN:27500
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924) Trimethoprim
|
0.1, 0.2, 0.3, 0.4 ug/ml
|-
|
OMP_AN:27501
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Dibucaine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:247956) Dibucaine
|
0.4, 0.8, 1.2 mM
|-
|
OMP_AN:27502
|

|
OMP:0007373
|
resistant to alkylating agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:methyl methanesulfonate (MMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:25255) methyl methanesulfonate (MMS)
|
0.05%
|-
|
OMP_AN:27503
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nitrofurantoin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:71415) Nitrofurantoin
|
0.1, 0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27504
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Novobiocin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31924) Novobiocin sodium salt
|
4, 6, 8, 10, 12, 30 ug/ml
|-
|
OMP_AN:27505
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Methotrexate hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:165528) Methotrexate hydrate
|
1, 25 ug/ml
|-
|
OMP_AN:27506
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxorubicin hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31522) Doxorubicin hydrochloride
|
1, 10 ug/ml
|-
|
OMP_AN:27507
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EDTA disodium salt dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758) EDTA disodium salt dihydrate
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27508
|

|
OMP:0007909
|
resistant to a chelator
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EGTA
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:30740) EGTA
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27509
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cisplatin-cis-Diamineplatinum(II) dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27899) Cisplatin-cis-Diamineplatinum(II) dichloride
|
20, 50, 100 ug/ml
|-
|
OMP_AN:27510
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mitomycin C
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27504) Mitomycin C
|
0.1 ug/ml
|-
|
OMP_AN:27511
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Epinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28918) (-)-Epinephrine
|
50, 250, 1000 uM
|-
|
OMP_AN:27512
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydroxyurea
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:44423) Hydroxyurea
|
1, 5, 10 mM
|-
|
OMP_AN:27513
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phenazine methosulfate (PMS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8055) Phenazine methosulfate (PMS)
|
0.02, 0.05, 0.1 mM
|-
|
OMP_AN:27514
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chlorpromazine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3649) Chlorpromazine hydrochloride
|
3, 6, 12, 24 uM
|-
|
OMP_AN:27515
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fusidic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:126963539) Fusidic acid sodium salt
|
1, 5, 20, 50 ug/ml
|-
|
OMP_AN:27516
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Thiolactomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:445629) Thiolactomycin
|
1, 5, 50 uM
|-
|
OMP_AN:27517
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nigericin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16760591) Nigericin sodium salt
|
0.1, 1, 5 uM
|-
|
OMP_AN:27518
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2955) Azithromycin
|
0.02, 0.1, 1 ug/ml
|-
|
OMP_AN:27519
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Clarithromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3732) Clarithromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27520
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Erythromycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42355) Erythromycin
|
0.1, 1, 5, 10 ug/ml
|-
|
OMP_AN:27521
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spiramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6419898) Spiramycin
|
1, 5, 20 ug/ml
|-
|
OMP_AN:27522
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Doxycycline hyclate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34730) Doxycycline hyclate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27523
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Minocycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50697) Minocycline hydrochloride
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27524
|

|
OMP:0006065
|
resistant to tetracycline
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tetracycline hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:35006) Tetracycline hydrochloride
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27525
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amikacin sulfate salt (disulfate)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2638) Amikacin sulfate salt (disulfate)
|
0.05, 0.1, 0.2 ug/ml
|-
|
OMP_AN:27526
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Gentamicin sulfate salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:5312) Gentamicin sulfate salt
|
0.05, 0.1 ug/ml
|-
|
OMP_AN:27527
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Spectinomycin dihydrochloride pentahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9217) Spectinomycin dihydrochloride pentahydrate
|
4, 6 ug/ml
|-
|
OMP_AN:27528
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32158) Streptomycin sulfate
|
0.05 ug/ml
|-
|
OMP_AN:27529
|

|
OMP:0006060
|
resistant to aminoglycoside
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tobramycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28864) Tobramycin
|
0.05, 0.1, 0.2, 0.4 ug/ml
|-
|
OMP_AN:27530
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Amoxicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:2676) Amoxicillin
|
0.25, 0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27531
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ampicillin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28971) Ampicillin
|
1, 2, 4, 8 ug/ml
|-
|
OMP_AN:27532
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Aztreonam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:161680) Aztreonam
|
0.02, 0.04 ug/ml
|-
|
OMP_AN:27533
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Carbenicillin disodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34609) Carbenicillin disodium
|
0.5, 1, 1.5 ug/ml
|-
|
OMP_AN:27534
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefoxitin sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3501) Cefoxitin sodium hydrate
|
0.25, 0.5, 0.75, 1 ug/ml
|-
|
OMP_AN:27535
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380) Cefsulodin sodium salt hydrate
|
6, 12, 18, 24 ug/ml
|-
|
OMP_AN:27536
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ceftazidime hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3509) Ceftazidime hydrate
|
0.025, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27537
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51208) Mecillinam
|
0.03, 0.06, 0.09, 0.12 ug/ml
|-
|
OMP_AN:27538
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Oxacillin sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:52134) Oxacillin sodium salt
|
0.5, 5, 40 ug/ml
|-
|
OMP_AN:27539
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ciprofloxacin hydrochloride hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:59936) Ciprofloxacin hydrochloride hydrate
|
0.004, 0.006, 0.008 ug/ml
|-
|
OMP_AN:27540
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Levofloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:63598) Levofloxacin
|
0.002 ug/ml
|-
|
OMP_AN:27541
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nalidixic acid sodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:3864541) Nalidixic acid sodium salt
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27542
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Norfloxacin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:100246) Norfloxacin
|
0.01, 0.02, 0.04 ug/ml
|-
|
OMP_AN:27543
|

|
OMP:0006043
|
resistant to quinolone
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Streptonigrin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9287) Streptonigrin
|
0.1, 0.2, 0.5 ug/ml
|-
|
OMP_AN:27544
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Chloramphenicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17698) Chloramphenicol
|
0.5, 1, 1.5, 2 ug/ml
|-
|
OMP_AN:27545
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Isoniazid
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:6030) Isoniazid
|
0.2, 1, 1.5 mM
|-
|
OMP_AN:27546
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Pyocyanin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8653) Pyocyanin
|
0.2, 1, 10 ug/ml
|-
|
OMP_AN:27547
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Hydrogen peroxide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16240) Hydrogen peroxide
|
0.1, 0.5, 1, 2 mM
|-
|
OMP_AN:27548
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cerulenin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:171741) Cerulenin
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27549
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CHIR-090
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:134107 CID:11546620) CHIR-090
|
0.02, 0.025, 0.04, 0.05, 0.075 ug/ml
|-
|
OMP_AN:27550
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Ethidium Bromide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4883) Ethidium Bromide
|
2, 10, 50 ug/ml
|-
|
OMP_AN:27551
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Rifampicin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28077) Rifampicin
|
1, 2 ug/ml
|-
|
OMP_AN:27552
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Azidothymidine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:10110) Azidothymidine
|
0.5, 1, 2.5 ng/ml
|-
|
OMP_AN:27553
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Puromycin dihydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8642) Puromycin dihydrochloride
|
1, 5, 25 ug/ml
|-
|
OMP_AN:27554
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Tunicamycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:29699) Tunicamycin
|
1, 3, 7.5 ug/ml
|-
|
OMP_AN:27555
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin disodium salt
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162) Fosfomycin disodium salt
|
1 ug/ml
|-
|
OMP_AN:27556
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bicyclomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:60584) Bicyclomycin
|
1, 10 ug/ml
|-
|
OMP_AN:27557
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:A22
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:2830968) A22
|
0.5, 2, 5, 15 ug/ml
|-
|
OMP_AN:27558
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:D-Cycloserine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:40009) D-Cycloserine
|
16 ug/ml
|-
|
OMP_AN:27559
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Actinomycin D
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:27666 CID:457193) Actinomycin D
|
2.5, 5, 10, 15 ug/ml
|-
|
OMP_AN:27560
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bacitracin Zinc Sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16219032) Bacitracin Zinc Sulfate
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27561
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bleomycin sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:34582) Bleomycin sulfate
|
0.1, 0.5, 1, 2 ug/ml
|-
|
OMP_AN:27562
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cecropin B
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:16130488) Cecropin B
|
0.1, 0.3 ug/ml
|-
|
OMP_AN:27563
|

|
OMP:0007171
|
resistant to antimicrobial peptide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Indolicidin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (UniProtKB:P33046) Indolicidin
|
0.1 ug/ml
|-
|
OMP_AN:27564
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Phleomycin
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75044) Phleomycin
|
0.2, 0.5, 1 ug/ml
|-
|
OMP_AN:27565
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Polymyxin B sulfate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8310) Polymyxin B sulfate
|
1, 2, 4, 6 ug/ml
|-
|
OMP_AN:27566
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Vancomycin HCl hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9932) Vancomycin HCl hydrate
|
10, 20, 50 ug/ml
|-
|
OMP_AN:27567
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Theophylline anhydrous
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28177) Theophylline anhydrous
|
10, 100 ug/ml
|-
|
OMP_AN:27568
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(±)-Verapamil hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53188) (±)-Verapamil hydrochloride
|
0.1, 0.5, 1 mM
|-
|
OMP_AN:27569
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:EtOH
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:16236) EtOH
|
2, 4, 6 %
|-
|
OMP_AN:27570
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Propidium iodide
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:51240) Propidium iodide
|
1, 20, 50 ug/ml
|-
|
OMP_AN:27571
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3259) CCCP (Carbonyl cyanide 3-chlorophenylhydrazone)
|
0.1, 0.5, 2 ug/ml
|-
|
OMP_AN:27572
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Epigallocatechin gallate (EGCG)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:4806) Epigallocatechin gallate (EGCG)
|
5, 20, 50 uM
|-
|
OMP_AN:27573
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Procaine hydrochloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8431) Procaine hydrochloride
|
1, 5, 10, 30 mM
|-
|
OMP_AN:27574
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Paraquat dichloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:28786) Paraquat dichloride
|
0.2, 1, 5, 10, 18 uM
|-
|
OMP_AN:27575
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Acriflavine (acriflavinium chloride)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:74728) Acriflavine (acriflavinium chloride)
|
2, 10 ug/ml
|-
|
OMP_AN:27576
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamethizole
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9331) Sulfamethizole
|
100, 200, 300 ug/ml
|-
|
OMP_AN:27577
|

|
OMP:0007829
|
resistant to sulfonamide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Sulfamonomethoxine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32164) Sulfamonomethoxine
|
50, 100 ug/ml
|-
|
OMP_AN:27578
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cobalt stress-Co(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53503) Cobalt stress-Co(II)Cl2 hexahydrate
|
0.1, 0.5 mM (LB)
|-
|
OMP_AN:27579
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Copper stress-CuCl2 dihydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:86318) Copper stress-CuCl2 dihydrate
|
1, 2, 4 mM (LB)
|-
|
OMP_AN:27580
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Nickel stress-Ni(II)Cl2 hexahydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:53542) Nickel stress-Ni(II)Cl2 hexahydrate
|
0.1, 1 mM (LB)
|-
|
OMP_AN:27581
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Benzalkonium chloride
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3020) Benzalkonium chloride
|
1, 10, 25 ug/ml
|-
|
OMP_AN:27582
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:8984) SDS
|
0.5, 1, 2, 3, 4 %
|-
|
OMP_AN:27583
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triton X-100
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9750) Triton X-100
|
0.01, 0.03, 0.2 %
|-
|
OMP_AN:27584
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Taurocholic acid sodium salt hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23687511) Taurocholic acid sodium salt hydrate
|
0.1, 0.5, 1 %
|-
|
OMP_AN:27585
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cholate sodium hydrate
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23679061) Cholate sodium hydrate
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27586
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Deoxycholate sodium
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:9177) Deoxycholate sodium
|
0.1, 0.5, 2 %
|-
|
OMP_AN:27587
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26711 + CHEBI:9177) Bile salts chemical-Mixture of sodium cholate (CHEBI:26711) and sodium deoxycholate (CHEBI:9177)
|
0.1, 0.5, 1, 2 %
|-
|
OMP_AN:27588
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Triclosan/Irgasan
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:164200) Triclosan/Irgasan
|
0.05 ug/ml
|-
|
OMP_AN:27589
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefsulodin + Mecillinam
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31380 + CHEBI:51208) Cefsulodin + Mecillinam
|
6 + 0.03 ug/ml
|-
|
OMP_AN:27590
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:6093162 + CHEBI:4170) Fosfomycin (CID:6093162) +Glucose-6-phosphate (CHEBI:4170)
|
0.05, 0.2 ug/ml (in 50 mg/ml G6P)
|-
|
OMP_AN:27591
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:45924 + CHEBI:9331) Trimethoprim (CHEBI:45924) + Sulfamethizole (CHEBI:9331)
|
0.1 + 50 ug/ml
|-
|
OMP_AN:27592
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:50010) Calcofluor White M2R (F3543 Fluorescent Brightener 28)
|
50 ug/ml
|-
|
OMP_AN:27593
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:(-)-Norepinephrine
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:18357) (-)-Norepinephrine
|
100, 1000 uM
|-
|
OMP_AN:27594
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:64758 + CHEBI:8984) SDS (CHEBI:8984) +EDTA (CHEBI:64758)
|
0.5%/0.1mM, 0.5%/0.5mM, 1%/0.5mM
|-
|
OMP_AN:27595
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:NaCl
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:26710) NaCl
|
150, 300, 450, 600 mM
|-
|
OMP_AN:27596
|

|
OMP:0006047
|
resistant to beta-lactam
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Cefaclor
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:3478) Cefaclor
|
1, 2, 3 ug/ml
|-
|
OMP_AN:27597
|

|
OMP:0007247
|
resistant to a chemical
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Radicicol
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:556075) Radicicol
|
1, 5, 10 uM
|-
|
OMP_AN:27598
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27599
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27600
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27601
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27602
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27603
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27604
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27605
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27606
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27607
|

|
OMP:0007018
|
does not require growth factor(s)
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27608
|

|
OMP:0007884
|
resistant to a metal
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron excess-FeSO4 heptahydride (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron excess-FeSO4 heptahydride (MOPS)
|
1mM (MOPS; normal 100uM)
|-
|
OMP_AN:27609
|

|
OMP:0007962
|
presence of cell population growth during nutrient limitation
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:Iron starvation-FeSO4·7H2O (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:75836) Iron starvation-FeSO4·7H2O (MOPS)
|
2uM (MOPS; normal 100uM)
|-
|
OMP_AN:27610
|

|
OMP:0007306
|
presence of inorganic nitrogen source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:MOPS
*medium:NH4Cl (MOPS)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:31206) NH4Cl (MOPS)
|
9.5mm
|-
|
OMP_AN:27611
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Sodium Acetate anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:32954) Sodium Acetate anhydrous (M9)
|
0.6%
|-
|
OMP_AN:27612
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Glucosamine hydrochloride (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:91431) D-(+) Glucosamine hydrochloride (M9)
|
0.2%
|-
|
OMP_AN:27613
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-Glucose anhydrous (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:42758) D-Glucose anhydrous (M9)
|
0.2%
|-
|
OMP_AN:27614
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Glycerol (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:17754) Glycerol (M9)
|
0.4%
|-
|
OMP_AN:27615
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:D-(+) Maltose monohydrate (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CID:23615261) D-(+) Maltose monohydrate (M9)
|
0.1%
|-
|
OMP_AN:27616
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:N-Acetyl-D-glucosamine (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:506227) N-Acetyl-D-glucosamine (M9)
|
0.15%
|-
|
OMP_AN:27617
|

|
OMP:0006024
|
presence of organic carbon source utilization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:M9
*medium:Succinic acid (M9)
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (CHEBI:15741) Succinic acid (M9)
|
0.3%
|-
|
OMP_AN:27618
|

|
OMP:0005190
|
presence of anaerobic growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Anaerobic
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|

|-
|
OMP_AN:27619
|

|
OMP:0007282
|
presence of UV radiation resistance
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:UV
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
6, 12, 18, 24 sec
|-
|
OMP_AN:27620
|

|
OMP:0007956
|
presence of population growth at low temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:Low temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
16, 18, 20 C
|-
|
OMP_AN:27621
|

|
OMP:0007950
|
presence of population growth at high temperature
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:High temperature
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|

|
40, 42, 43.5, 45 C
|-
|
OMP_AN:27622
|

|
OMP:0007945
|
presence of population growth at acidic pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:MES-HOMOPIPES
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:329817955 SID:57651422) MES-HOMOPIPES
|
pH 4, 4.5, 5, 6
|-
|
OMP_AN:27623
|

|
OMP:0007771
|
presence of population growth at alkaline pH
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

*temperature:37C
*medium:LB agar
*medium:TAPS
|
ECO:0007005
|
high throughput direct assay evidence used in manual assertion
|
PMID:21185072
|
towards some (**SID:24900259) TAPS
|
pH 8, 9, 9.5, 10

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.32098.K5be4c9cc7a839&page=32098&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-09-25T04:22:25Z

Peterwu: Table edited by $2 via TableEdit

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-09-25T03:53:09Z

Peterwu: Table edited by $2 via TableEdit

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-09-25T03:15:09Z

Peterwu: Table edited by $2 via TableEdit

OMP ST:74667 ! Virtual reference strain for Nichols RJ (2011) Cell 144, 143-156.

2019-09-25T02:54:27Z

Peterwu: Table edited by $2 via TableEdit

PMID:19734312

2018-07-19T21:36:24Z

Peterwu: Fill PMID: Page!

{{RightTOC}}



{| id="H5b5104576f5c7" class=" tableEdit PMID_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Citation
||
'''Hobbs, EC, Astarita, JL and Storz, G''' (2010) Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. ''J. Bacteriol.'' '''192''':59-67
|-
!align=left align='left' bgcolor='#CCCCFF' |Abstract
||
More than 80 small regulatory RNAs (sRNAs) and 60 proteins of 16 to 50 amino acids (small proteins) are encoded in the Escherichia coli genome. The vast majority of the corresponding genes have no known function. We screened 125 DNA bar-coded mutants to identify novel cell envelope stress and acute acid shock phenotypes associated with deletions of genes coding for sRNAs and small proteins. Nine deletion mutants (ssrA, micA, ybaM, ryeF, yqcG, sroH, ybhT, yobF, and glmY) were sensitive to cell envelope stress and two were resistant (rybB and blr). Deletion mutants of genes coding for four small proteins (yqgB, mgrB, yobF, and yceO) were sensitive to acute acid stress. We confirmed each of these phenotypes in one-on-one competition assays against otherwise-wild-type lacZ mutant cells. A more detailed investigation of the SsrA phenotype suggests that ribosome release is critical for resistance to cell envelope stress. The bar-coded deletion collection we generated can be screened for sensitivity or resistance to virtually any stress condition.
|-
!align=left align='left' bgcolor='#CCCCFF' |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19734312 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2798238 PMC2798238]
Online version:[http://dx.doi.org/10.1128/JB.00873-09 10.1128/JB.00873-09]
|-
!align=left align='left' bgcolor='#CCCCFF' |Keywords
||
Cell Wall/drug effects; Cell Wall/metabolism; Escherichia coli/drug effects; Escherichia coli/genetics; Escherichia coli/metabolism; Escherichia coli Proteins/genetics; Escherichia coli Proteins/metabolism; Escherichia coli Proteins/physiology; Gene Expression Regulation, Bacterial/drug effects; Gene Expression Regulation, Bacterial/genetics; Genetic Complementation Test; Hydrochloric Acid/pharmacology; Kanamycin Resistance/physiology; Mutation; Oligonucleotide Array Sequence Analysis; RNA, Bacterial/genetics; RNA, Bacterial/physiology; Sodium Dodecyl Sulfate/pharmacology; Stress, Physiological

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28505.H5b5104576f5c7&page=28505&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table]</div> ||
|}


==Main Points of the Paper ==
{{LitSignificance}}

== Materials and Methods Used ==
{{LitMaterials}}

==Phenotype Annotations==
{{AnnotationTableHelp}}
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W5b5104581a104" class=" tableEdit Phenotype_Table_2"
|- align='left' bgcolor='#CCCCFF'
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.28505.W5b5104581a104&page=28505&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</div> || || || || || || || || ||
|}
</protect>

==Notes==

==References==
{{RefHelp}}
<references/>

[[Category:Publication]]

PMID:19734312

2018-07-19T21:36:23Z

Peterwu: New PMID: Page!

PMID on Demand placeholder

OMP ST:1289 ! Escherichia coli K-12 JW5335

2018-07-16T19:16:39Z

Peterwu:

__TOC__

==Strain Summary==
<protect>

{| id="V57d9a02cf08d3" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5335
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW5335-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 nudD749(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=126328 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=126328 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8926.V57d9a02cf08d3&page=8926&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==
Gene nudD referred to by its old name (wcaH) in PMID:17122336.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N57d9a02cf3abc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:1126
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +nudD749(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8926.N57d9a02cf3abc&page=8926&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1289 ! Escherichia coli K-12 JW5335

2018-07-16T19:16:24Z

Peterwu:

OMP ST:925 ! Escherichia coli K-12 JW5249

2018-06-22T16:37:45Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="C576440a421c31" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5249
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
BW25113 marA752(del)::kan, ECK1524, JW5249-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 marA752(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*other:[http://cgsc.biology.yale.edu/Strain.php?ID=109550 Coli Genetic Stock Center]
*PMID:16738554
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=109550 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.7901.C576440a421c31&page=7901&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="I576440a424d0a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:662
|

|
OMP:0006044
|
decreased resistance to beta-lactam
|
Relative to: OMP_AN:661

<hr>Genotype differences: 
+marA752(del)
<hr>Condition differences: 
no differences
|
medium:mecillinam (0.09 ug ml-1)
|

|

|
PMID:21185072
|
CHEBI:51208 mecillinam
|
fitness score = -4.00
|-
|
OMP_AN:664
|

|
OMP:0007370
|
decreased resistance to an acridine
|
Relative to: OMP_AN:663

<hr>Genotype differences: 
+marA752(del)
<hr>Condition differences: 
no differences
|
medium:acriflavine (10 ug ml-1)
|

|

|
PMID:21185072
|
CHEBI:74728 acriflavine
|
fitness score = -3.59

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.7901.I576440a424d0a&page=7901&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>
[[Category:OMP ST:800 ! Escherichia coli K-12 BW25113 derivatives]]
</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1173 ! Escherichia coli K-12 JW5596

2018-06-21T22:09:39Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="O57d6dfa0f270d" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 JW5596-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW5596
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 rffT744(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=109763 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=109763 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8875.O57d6dfa0f270d&page=8875&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M57d6dfa10159c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:1083
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffT744(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1138
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffT744(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8875.M57d6dfa10159c&page=8875&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:1173 ! Escherichia coli K-12 JW5596

2018-06-21T22:09:03Z

Peterwu: Peterwu moved page OMP ST:1173 ! Escherichia K-12 JW5596-1 to OMP ST:1173 ! Escherichia coli K-12 JW5596-1 without leaving a redirect

__TOC__

==Strain Summary==
<protect>

{| id="O57d6dfa0f270d" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia K-12 JW5596-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
JW5596
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [http://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
DE(araD-araB)567 DE(rhaD-rhaB)568 F- Lambda- hsdR514 lacZ4787(del)(::rrnB-3) rph-1 rffT744(del)::kan
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
[http://cgsc.biology.yale.edu/Strain.php?ID=109763 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=109763 Coli Genetic Stock Center]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:800 ! Escherichia coli K-12 BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8875.O57d6dfa0f270d&page=8875&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:OMP ST:800 ! Escherichia coli K-12 BW25113 derivatives]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="M57d6dfa10159c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:1083
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:881

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffT744(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|-
|
OMP_AN:1138
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:882

<hr>Genotype differences: 
+DE(araD-araB)567 +DE(rhaD-rhaB)568 +hsdR514 +lacZ4787(del)( +rffT744(del) -IN(rrnD-rrnE)1
<hr>Condition differences: 
no differences
|
*temperature:33C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17122336
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.8875.M57d6dfa10159c&page=8875&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:15703 ! Saccharomyces cerevisiae BY4741 fet3-delta

2018-05-02T01:36:15Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H5ace5aaca6aa8" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YMR058W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.H5ace5aaca6aa8&page=15693&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B5ace5aaca7a06" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22838
|

|
OMP:0007070
|
decreased carbon source utilization
|
Relative to: OMP_AN:22737

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111 mM) galactose
|-
|
OMP_AN:23223
|

|
OMP:0007010
|
decreased growth at alkaline pH
|
Relative to: OMP_AN:22741

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
*medium:YPD
*pH:8
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:23516
|

|
OMP:0007776
|
decreased population growth on defined medium
|
Relative to: OMP_AN:22743

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.B5ace5aaca7a06&page=15693&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:15703 ! Saccharomyces cerevisiae BY4741 fet3-delta

2018-05-02T01:34:34Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H5ace5aaca6aa8" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YMR058W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.H5ace5aaca6aa8&page=15693&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B5ace5aaca7a06" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22838
|

|
OMP:0007070
|
decreased carbon source utilization
|
Relative to: OMP_AN:22737

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111 mM) galactose
|-
|
OMP_AN:23223
|

|
OMP:0007010
|
decreased growth at alkaline pH
|
Relative to: OMP_AN:22741

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
*medium:YPD
*pH:8
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:23516
|

|
OMP:0007776
|
decreased population growth on defined medium
|
Relative to: OMP_AN:22743

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:26658
|

|
OMP:0007010
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|

|

|

|

|

|-
|
OMP_AN:26659
|

|
OMP:0007070
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|

|

|

|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.B5ace5aaca7a06&page=15693&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:15703 ! Saccharomyces cerevisiae BY4741 fet3-delta

2018-05-02T01:31:13Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H5ace5aaca6aa8" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 fet3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YMR058W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.H5ace5aaca6aa8&page=15693&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B5ace5aaca7a06" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22838
|

|
OMP:0007070
|
decreased carbon source utilization
|
Relative to: OMP_AN:22737

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111 mM) galactose
|-
|
OMP_AN:23223
|

|
OMP:0007010
|
decreased growth at alkaline pH
|
Relative to: OMP_AN:22741

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
*medium:YPD
*pH:8
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:23516
|

|
OMP:0007776
|
decreased population growth on defined medium
|
Relative to: OMP_AN:22743

<hr>Genotype differences: 
+fet3-delta
<hr>Condition differences: 
no differences
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:26658
|

|
OMP:0007010
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|

|

|

|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15693.B5ace5aaca7a06&page=15693&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21738 ! Saccharomyces cerevisiae BY4742 ubp13-delta

2018-04-30T03:37:11Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="O5ace7340b9fa3" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 ubp13-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ubp13-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YBL067C Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21728.O5ace7340b9fa3&page=21728&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S5ace7340baf00" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21728.S5ace7340baf00&page=21728&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21612 ! Saccharomyces cerevisiae BY4742 hom6-delta

2018-04-30T03:36:20Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="C5ace731ee05e9" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 hom6-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 hom6-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YJR139C Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21602.C5ace731ee05e9&page=21602&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="D5ace731ee1548" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21602.D5ace731ee1548&page=21602&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21583 ! Saccharomyces cerevisiae BY4742 oca1-delta

2018-04-30T03:35:28Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="O5ace73173be55" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 oca1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 oca1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YNL099C Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21573.O5ace73173be55&page=21573&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P5ace73173ce60" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21573.P5ace73173ce60&page=21573&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21879 ! Saccharomyces cerevisiae BY4742 YER091C-A-delta

2018-04-30T03:34:23Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E5ace736762eb3" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 YER091C-A-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 YER091C-A-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YER091C-A Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21869.E5ace736762eb3&page=21869&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N5ace736763bf1" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21869.N5ace736763bf1&page=21869&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21712 ! Saccharomyces cerevisiae BY4742 ysy6-delta

2018-04-30T03:32:57Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="H5ace733a181e6" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 ysy6-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ysy6-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YBR162W-A Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21702.H5ace733a181e6&page=21702&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V5ace733a1917e" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21702.V5ace733a1917e&page=21702&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21848 ! Saccharomyces cerevisiae BY4742 tma64-delta

2018-04-30T03:32:37Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ace735f164be" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 tma64-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 tma64-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YDR117C Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21838.F5ace735f164be&page=21838&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X5ace735f1735f" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21838.X5ace735f1735f&page=21838&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21644 ! Saccharomyces cerevisiae BY4742 pef1-delta

2018-04-30T03:31:10Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="P5ace732702e09" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 pef1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 pef1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YGR058W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21634.P5ace732702e09&page=21634&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N5ace732703d66" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21634.N5ace732703d66&page=21634&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21523 ! Saccharomyces cerevisiae BY4742 ett1-delta

2018-04-30T03:30:29Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="B5ace7306ced33" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 ett1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ett1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YOR051C Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21513.B5ace7306ced33&page=21513&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X5ace7306cfe6e" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21513.X5ace7306cfe6e&page=21513&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21508 ! Saccharomyces cerevisiae BY4742 hog1-delta

2018-04-30T03:29:17Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="C5ace7302a8244" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 hog1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 hog1-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YLR113W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21498.C5ace7302a8244&page=21498&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="N5ace7302a9139" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21498.N5ace7302a9139&page=21498&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21488 ! Saccharomyces cerevisiae BY4742 gal3-delta

2018-04-30T03:28:34Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5ace72fd9f412" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 gal3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 gal3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YDR009W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21478.L5ace72fd9f412&page=21478&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="U5ace72fda14b3" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21478.U5ace72fda14b3&page=21478&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21987 ! Saccharomyces cerevisiae BY4742 gpi14-delta

2018-04-30T03:27:19Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="P5ace738735d09" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742 gpi14-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 gpi14-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YJR013W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9003 ! Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21977.P5ace738735d09&page=21977&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W5ace738736cd4" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21977.W5ace738736cd4&page=21977&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:52:44Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*pH:8.0
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:51:49Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:51:03Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:50:04Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:49:09Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:NaCl (1M)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:48:06Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:NaCl (1M)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:36:01Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:NaCl (1M)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T01:34:27Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="F5ac9206882742" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201389
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4742
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATalpha his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/products/all/201389.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.F5ac9206882742&page=15557&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="O5ac92068845dc" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:24800
|

|
OMP:0007460
|
viable vegetative cell population
|

|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24801
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:24802
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911] glucitol
|

|-
|
OMP_AN:24803
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660] nystatin
|

|-
|
OMP_AN:24804
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*medium:NaCl (1M)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911] NaCl
|

|-
|
OMP_AN:24805
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD*pH:8.0
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24806
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:24807
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine

[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:24808
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:24809
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:24810
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15557.O5ac92068845dc&page=15557&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T00:37:46Z

Peterwu: Table edited by Peterwu via TableEdit

OMP ST:9003 ! Saccharomyces cerevisiae BY4742

2018-04-30T00:32:15Z

Peterwu: Table edited by Peterwu via TableEdit

OMP ST:21480 ! Saccharomyces cerevisiae BY4741 ilv2-delta

2018-04-29T21:50:24Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="V5ace6100c10f5" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 ilv2-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ilv2-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YMR108W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21470.V5ace6100c10f5&page=21470&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5ace6100c217d" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21470.K5ace6100c217d&page=21470&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21480 ! Saccharomyces cerevisiae BY4741 ilv2-delta

2018-04-29T21:49:05Z

Peterwu: Reverted edits by Peterwu (talk) to last revision by 127.0.0.1

__TOC__

==Strain Summary==
<protect>

{| id="V5ace6100c10f5" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 ilv2-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 ilv2-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YMR108W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21470.V5ace6100c10f5&page=21470&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5ace6100c217d" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22722
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|

|

|
PMID:12140549
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.21470.K5ace6100c217d&page=21470&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:21480 ! Saccharomyces cerevisiae BY4741 ilv2-delta

2018-04-29T21:45:59Z

Peterwu: Table edited by Peterwu via TableEdit

OMP ST:15692 ! Saccharomyces cerevisiae BY4741 gal3-delta

2018-04-29T21:42:12Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5ace5aa971520" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741 gal3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0 gal3-delta
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:12140549
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-knockout-collection/?sourceId=Yeast/YDR009W Dharmacon]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:9002 ! Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15682.L5ace5aa971520&page=15682&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ace5aa9735a4" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15682.A5ace5aa9735a4&page=15682&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:9002 ! Saccharomyces cerevisiae BY4741

2018-04-29T21:40:18Z

Peterwu: Table edited by Peterwu via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="B5ac920647450e" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Saccharomyces cerevisiae BY4741
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
ATCC 201388
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Saccharomyces cerevisiae
*Subspecies and/or strain: BY4741
*NCBI Taxonomy ID: 1247190
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
MATa his3-delta1 leu2-delta0 met15-delta0 ura3-delta0
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:9483801
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://dharmacon.horizondiscovery.com/cdnas-and-orfs/non-mammalian-cdnas-and-orfs/yeast/yeast-parental-strains/ Dharmacon]

[https://www.atcc.org/Products/All/201388.aspx ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:OMP ST:8810 ! Saccharomyces cerevisiae S288C
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15556.B5ac920647450e&page=15556&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="K5ac9206476370" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:22734
|

|
OMP:0007460
|
viable vegetative cell population
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPD
|
ECO:0005004
|
cell viability assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22737
|

|
OMP:0006024
|
heterotrophic
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:YPGal
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28260 CHEBI:28260] galactose
|
2% w/v (111mM) galactose
|-
|
OMP_AN:22738
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:glucitol (sorbitol) 1.5M
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:30911 CHEBI:30911]
glucitol
|

|-
|
OMP_AN:22739
|

|
OMP:0006039
|
resistant to macrolide
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:YPD
*medium:nystatin (10 uM)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:7660 CHEBI:7660]
nystatin
|

|-
|
OMP_AN:22740
|

|
OMP:0007517
|
presence of growth under high osmolarity
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:NaCl (1M)
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=26710 CHEBI:30911]
NaCl
|

|-
|
OMP_AN:22741
|

|
OMP:0007771
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*pH:8.0
*medium:YPD
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22742
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium (SC)
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|

|

|-
|
OMP_AN:22743
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic minimal medium + his/leu/ura
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15971 CHEBI:15971] L-histidine [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15603 CHEBI:15603] L-leucine [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17568 CHEBI:17568] uracil
|

|-
|
OMP_AN:22744
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - lysine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=13135 CHEBI:26710] L-lysine
|

|-
|
OMP_AN:22745
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - threonine
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16857 CHEBI:16857] L-threonine
|

|-
|
OMP_AN:22746
|

|
OMP:0007773
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
medium:synthetic complete medium - tryptophan
|
ECO:0000336
|
competitive growth assay evidence
|
PMID:12140549
|
[http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16828 CHEBI:16828] L-tryptophan
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.15556.K5ac9206476370&page=15556&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>