OMPwiki - User contributions [en]

Sandbox

2019-09-04T21:03:10Z

Krstruck: Table edited by $2 via TableEdit

You can '''add''' free text to the ''wiki''.

<protect>

{| id="P575f0b44a3cc0" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
BW25113
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Eschericia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: 83333
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- DE(araD-araB)567 lacZ4787(del)(::rrnB-3) LAM- rph-1 DE(rhaD-rhaB)568 hsdR514
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*other:[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
*PMID:10829079
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=64667 CGSC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
ancestor:[[OMP ST:174 ! Escherichia coli K-12 W1485]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.11.P575f0b44a3cc0&page=11&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:Strains that need OMP_ST accessions]]
</noinclude>
</protect>

how do I add ''italics''?

<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L4fbc20bff3bbc" class=" tableEdit Phenotype_Table_for_Papers_With_No_PMID"
|-
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status
|-
|
a mutation or genetic difference within a strain
|
*Taxon: A
*Strain: B
*Substrain: C
*NCBI Taxon ID: D
|
*Genotype of Reference Strain:
|
*Reference Condition:
|

|

|

|

|

|

|-
|
a mutation or genetic difference within a strain
|
*Taxon: A
*Strain: B
*Substrain: C
*NCBI Taxon ID: D
|
*Genotype of Reference Strain:
|
*Reference Condition:
*Experimental Condition: 10 mM aspartate
|

|

|

|

|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.11.L4fbc20bff3bbc&page=11&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_for_Papers_With_No_PMID edit table]</div> || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

Testing things have been moved over to the [http://microbialphenotypes.org/dev development site].
If this code doesn't work there, then we've got a problem.
--[[User:DanielRenfro|DanielRenfro]] 21:05, 5 May 2011 (UTC)

{|
|-
|width = 400|
<methodinput>
type=create
bgcolor = #dddddd
labeltext=Create a new Methods page:
editintro=MediaWiki:
buttonlabel=Create
preload=Template:Method
width=32
break=no
</methodinput>
|}

<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L556f3394a606c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:50
|

|
OMP:0000017
|
presence of endospore formation
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30
*medium:sporulation medium
|

|

|
PMID:2842295
|

|

|-
|
OMP_AN:51
|

|
OMP:0000035
|
malformed pilus
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:37
*medium:LB
|

|

|
PMID:12736
|

|

|-
|
OMP_AN:7750
|

|
OMP:0000052
|
presence of positive chemotaxis
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*pH:pH 7
*temperature:30C
*medium:maltose
*medium:minimal chemotaxis medium
|
ECO:0005803
|
motility assay evidence
|
PMID:5335897
|
maltose
|

|-
|
OMP_AN:27249
|

|
OMP:0000013
|
decreased endospore formation
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*pH:7.0
*temperature:37C
*medium:BHI medium
|

|

|
PMID:2842295
|

|

|-
|
OMP_AN:27368
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:25C
*medium:lysine agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:33131545335
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.11.L556f3394a606c&page=11&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T20:24:07Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb17370aecb" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41245
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yraP(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.M5ccb17370aecb&page=32617&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yraP(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yraP gene was inserted into this strain. The two transformants, CAG41511 and CAG41513, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S5ccb173711336" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27326
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=4E-7
|-
|
OMP_AN:27327
|
NOT
|
OMP:0007216
|
altered rifamycin resistance
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.6
|-
|
OMP_AN:27328
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:1568066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.8
|-
|
OMP_AN:27337
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27349
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27350
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27356
|
NOT
|
OMP:0007519
|
altered population growth in high osmolarity
|
Relative to: OMP_AN:27351

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710] NaCl
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.S5ccb173711336&page=32617&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T20:22:34Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb29f5af20c" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41408
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) feY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.M5ccb29f5af20c&page=32620&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5ccb29f5b513b" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27336
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27347
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27348
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27355
|
NOT
|
OMP:0007519
|
altered population growth in high osmolarity
|
Relative to: OMP_AN:27351

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710]
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.J5ccb29f5b513b&page=32620&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T20:20:02Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="C5ccb16a9628af" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41254
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) nlpB(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.C5ccb16a9628af&page=32616&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the nlpB(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the nlpB gene was inserted into this strain. The two transformants, CAG41534 and CAG41536, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb16a96891c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27323
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.8
|-
|
OMP_AN:27324
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=4E-5
|-
|
OMP_AN:27325
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27335
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27345
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27346
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27354
|
NOT
|
OMP:0007519
|
altered population growth in high osmolarity
|
Relative to: OMP_AN:27351

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710] NaCl
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.R5ccb16a96891c&page=32616&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T20:15:30Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Km CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3
|-
|
OMP_AN:27334
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27343
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27344
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27353
|
NOT
|
OMP:0007519
|
altered population growth in high osmolarity
|
Relative to: OMP_AN:27351

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710] NaCl
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T20:13:57Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="H5ccb29a162c52" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41241
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yeaY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.H5ccb29a162c52&page=32619&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W5ccb29a1685e4" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27333
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27341
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27342
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27352
|
NOT
|
OMP:0007519
|
altered population growth in high osmolarity
|
Relative to: OMP_AN:27351

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710] NaCl
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.W5ccb29a1685e4&page=32619&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T20:11:58Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="T5ccb112888714" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.T5ccb112888714&page=32614&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb1128a4149" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27317
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.9
|-
|
OMP_AN:27318
|

|
OMP:0007218
|
resistant to rifamycin
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.1
|-
|
OMP_AN:27319
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27332
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27339
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27340
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27351
|

|
OMP:0007517
|
presence of population growth in high osmolarity
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:Low-osmolarity medium
*medium:NaCl
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710 CHEBI:26710] NaCl
|
The low-osmolarity medium was supplemented with 0.1 M NaCl, 0.2 M NaCl, 0.3 M NaCl, 0.4 M NaCl

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.R5ccb1128a4149&page=32614&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T18:12:00Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb17370aecb" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41245
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yraP(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.M5ccb17370aecb&page=32617&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yraP(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yraP gene was inserted into this strain. The two transformants, CAG41511 and CAG41513, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S5ccb173711336" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27326
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=4E-7
|-
|
OMP_AN:27327
|
NOT
|
OMP:0007216
|
altered rifamycin resistance
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.6
|-
|
OMP_AN:27328
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:1568066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.8
|-
|
OMP_AN:27337
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27349
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27350
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.S5ccb173711336&page=32617&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T18:10:29Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb29f5af20c" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41408
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) feY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.M5ccb29f5af20c&page=32620&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5ccb29f5b513b" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27336
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27347
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27348
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.J5ccb29f5b513b&page=32620&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T18:09:05Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="C5ccb16a9628af" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41254
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) nlpB(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.C5ccb16a9628af&page=32616&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the nlpB(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the nlpB gene was inserted into this strain. The two transformants, CAG41534 and CAG41536, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb16a96891c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27323
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.8
|-
|
OMP_AN:27324
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=4E-5
|-
|
OMP_AN:27325
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27335
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27345
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27346
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.R5ccb16a96891c&page=32616&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T18:06:13Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Km CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3
|-
|
OMP_AN:27334
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27343
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27344
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T18:04:38Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="H5ccb29a162c52" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41241
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yeaY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.H5ccb29a162c52&page=32619&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W5ccb29a1685e4" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27333
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27341
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27339

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27342
|
NOT
|
OMP:0007001
|
altered motility
|
Relative to: OMP_AN:27340

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.W5ccb29a1685e4&page=32619&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T18:03:41Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="T5ccb112888714" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.T5ccb112888714&page=32614&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb1128a4149" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27317
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.9
|-
|
OMP_AN:27318
|

|
OMP:0007218
|
resistant to rifamycin
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.1
|-
|
OMP_AN:27319
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27332
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27339
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27340
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.R5ccb1128a4149&page=32614&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T18:01:48Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="T5ccb112888714" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.T5ccb112888714&page=32614&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb1128a4149" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27317
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.9
|-
|
OMP_AN:27318
|

|
OMP:0007218
|
resistant to rifamycin
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.1
|-
|
OMP_AN:27319
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27332
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27339
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30 C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|-
|
OMP_AN:27340
|

|
OMP:0000005
|
presence of motility
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:37C
*medium:LB soft agar
|
ECO:0007192
|
motility assay evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.R5ccb1128a4149&page=32614&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T17:48:31Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="F5ccb1791aee3e" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41265
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) surA::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32618.F5ccb1791aee3e&page=32618&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5ccb1791b54c7" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27329
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
temperature:30 C30C
|
*temperature:30 C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=2E-6
|-
|
OMP_AN:27330
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=1E-8
|-
|
OMP_AN:27331
|

|
OMP:0007880
|
abolished resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=6E-5
|-
|
OMP_AN:27338
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32618.Q5ccb1791b54c7&page=32618&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T17:47:39Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb17370aecb" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41245
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yraP(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.M5ccb17370aecb&page=32617&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yraP(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yraP gene was inserted into this strain. The two transformants, CAG41511 and CAG41513, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S5ccb173711336" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27326
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=4E-7
|-
|
OMP_AN:27327
|
NOT
|
OMP:0007216
|
altered rifamycin resistance
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.6
|-
|
OMP_AN:27328
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:1568066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.8
|-
|
OMP_AN:27337
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.S5ccb173711336&page=32617&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T17:46:03Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb29f5af20c" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41408
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) feY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.M5ccb29f5af20c&page=32620&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5ccb29f5b513b" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27336
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+feY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32620.J5ccb29f5b513b&page=32620&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T17:45:21Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="C5ccb16a9628af" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41254
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) nlpB(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.C5ccb16a9628af&page=32616&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the nlpB(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the nlpB gene was inserted into this strain. The two transformants, CAG41534 and CAG41536, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb16a96891c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27323
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.8
|-
|
OMP_AN:27324
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=4E-5
|-
|
OMP_AN:27325
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27335
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.R5ccb16a96891c&page=32616&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T17:43:56Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Km CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3
|-
|
OMP_AN:27334
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T17:42:35Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="H5ccb29a162c52" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41241
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yeaY(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.H5ccb29a162c52&page=32619&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="W5ccb29a1685e4" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27333
|
NOT
|
OMP:0007901
|
altered resistance to bile acids
|
Relative to: OMP_AN:27332

<hr>Genotype differences:<br>
+yeaY(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32619.W5ccb29a1685e4&page=32619&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T17:41:12Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="T5ccb112888714" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.T5ccb112888714&page=32614&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb1128a4149" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27317
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.9
|-
|
OMP_AN:27318
|

|
OMP:0007218
|
resistant to rifamycin
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.1
|-
|
OMP_AN:27319
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7
|-
|
OMP_AN:27332
|

|
OMP:0007899
|
resistant to bile acids
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:MacConkey agar
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.R5ccb1128a4149&page=32614&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T17:35:17Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Km CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T17:34:49Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T17:33:41Z

Krstruck: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74713 ! Escherichia coli K-12 CAG41408

2019-05-02T17:33:41Z

Krstruck: make strain info table SpecialNewPage

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T17:33:11Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T17:32:17Z

Krstruck: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74712 ! Escherichia coli K-12 CAG41241

2019-05-02T17:32:17Z

Krstruck: make strain info table SpecialNewPage

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T17:28:12Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="F5ccb1791aee3e" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41265
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) surA::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32618.F5ccb1791aee3e&page=32618&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5ccb1791b54c7" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27329
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
temperature:30 C30C
|
*temperature:30 C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=2E-6
|-
|
OMP_AN:27330
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=1E-8
|-
|
OMP_AN:27331
|

|
OMP:0007880
|
abolished resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+surA +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=6E-5

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32618.Q5ccb1791b54c7&page=32618&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T17:21:39Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="M5ccb17370aecb" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41245
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yraP(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.M5ccb17370aecb&page=32617&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yraP(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yraP gene was inserted into this strain. The two transformants, CAG41511 and CAG41513, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="S5ccb173711336" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27326
|

|
OMP:0007897
|
abolished resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=4E-7
|-
|
OMP_AN:27327
|
NOT
|
OMP:0007216
|
altered rifamycin resistance
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.6
|-
|
OMP_AN:27328
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yraP(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:1568066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.8

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32617.S5ccb173711336&page=32617&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T17:15:56Z

Krstruck: /* Notes */

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T17:14:17Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="C5ccb16a9628af" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41254
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) nlpB(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.C5ccb16a9628af&page=32616&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the nlpB(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the nlpB gene was inserted into this strain. The two transformants, CAG41534 and CAG41536, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb16a96891c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27323
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.8
|-
|
OMP_AN:27324
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=4E-5
|-
|
OMP_AN:27325
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+nlpB(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32616.R5ccb16a96891c&page=32616&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T17:10:43Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T17:08:00Z

Krstruck: /* Notes */

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T17:05:45Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
NOT
|
OMP:0007134
|
altered resistance to an antimicrobial agent
|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T17:03:03Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
NOT
|
OMP:0007894
|
altered resistance to a surfactant
|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
same phenotype as reference strain
|

|

|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T17:01:47Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="Y5ccb15fabcb14" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG41434
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del) yfgL(del)::Cm CmR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:74707 ! Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.Y5ccb15fabcb14&page=32615&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==
In order to confirm that the yfgL(del) deletion was responsible for the sensitivity to certain antimicrobial agents, a plasmid carrying the yfgL gene was inserted into this strain. The two transformants, CAG41350 and CAG41517, were tested and the EOP experiment was repeated using these transformants. After introducing the plasmids, the transformants displayed the wild-type phenotype.

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="A5ccb15fac449a" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27320
|
same phenotype as reference strain
|

|

|
Relative to: OMP_AN:27317

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.4
|-
|
OMP_AN:27321
|

|
OMP:0007221
|
abolished resistance to rifamycin
|
Relative to: OMP_AN:27318

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=6E-9
|-
|
OMP_AN:27322
|
same phenotype as reference strain
|

|

|
Relative to: OMP_AN:27319

<hr>Genotype differences:<br>
+yfgL(del) +CmR
<hr>Condition differences:<br>
no differences
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32615.A5ccb15fac449a&page=32615&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T16:52:53Z

Krstruck: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="T5ccb112888714" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 CAG45114
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 Lamda(rpoHP3::lacZ) lacX74(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:15968066
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
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parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

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|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.T5ccb112888714&page=32614&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R5ccb1128a4149" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:27317
|

|
OMP:0007892
|
resistant to a surfactant
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:SDS (3.5%)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:8984 CHEBI:8984] SDS
|
Table 5; EOP=0.9
|-
|
OMP_AN:27318
|

|
OMP:0007218
|
resistant to rifamycin
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:rifampicin (5 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:28077 CHEBI:28077] rifampicin
|
Table 5; EOP=0.1
|-
|
OMP_AN:27319
|

|
OMP:0007876
|
resistant to an antimicrobial agent
|
Relative to:

<hr>Genotype differences:<br>
Nothing to compare<br/>
<hr>Condition differences:<br>
Nothing to compare<br/>
|
*temperature:30C
*medium:LB broth
*medium:novobiocin (150 mg/ml)
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:15968066
|
[https://www.ebi.ac.uk/chebi/searchId.do?chebiId=28368 CHEBI:28368] novobiocin
|
Table 5; EOP=0.7

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32614.R5ccb1128a4149&page=32614&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
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</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T16:51:10Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T16:48:11Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74707 ! Escherichia coli K-12 CAG45114

2019-05-02T16:43:48Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74708 ! Escherichia coli K-12 CAG41434

2019-05-02T16:39:48Z

Krstruck: /* Notes */

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T16:27:27Z

Krstruck: /* Notes */

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T16:16:05Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T16:15:13Z

Krstruck: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74711 ! Escherichia coli K-12 CAG41265

2019-05-02T16:15:13Z

Krstruck: make strain info table SpecialNewPage

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T16:14:40Z

Krstruck: Table edited by $2 via TableEdit

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T16:13:43Z

Krstruck: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74710 ! Escherichia coli K-12 CAG41245

2019-05-02T16:13:43Z

Krstruck: make strain info table SpecialNewPage

OMP ST:74709 ! Escherichia coli K-12 CAG41254

2019-05-02T16:12:22Z

Krstruck: Table edited by $2 via TableEdit