OMPwiki - User contributions [en]

OMP ST:159 ! Escherichia coli K-12 MG1655

2016-12-15T19:54:15Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="U55ba5ea3a81a6" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
CGSC #6300, ATCC 47076
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center]
*PMID:8501045
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center], [http://www.atcc.org/products/all/47076.aspx#generalinformation ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.U55ba5ea3a81a6&page=6753&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y55ba5ea3ab97c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:357
|

|
OMP:0007253
|
presence of host colonization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:1353
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17391508
|

|

|-
|
OMP_AN:7646
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7647
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7648
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7649
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7650
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7646

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7651
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7647

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7652
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7648

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7653
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7649

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7675
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7676
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Honey (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Honey (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7677
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17234 glucose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7678
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28757 fructose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7679
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17992 sucrose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7680
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Lactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Lactose (0.5%)
|
ECO:0000182
|

|
PMID:22047137
|
CHEBI:17716 lactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7681
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Galactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Galactose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28260 galactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7682
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Methylglyoxal (0.001%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Methylglyoxal (0.001%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17158 methylglyoxal
|
Crystal violet biofilm assay
|-
|
OMP_AN:7683
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:H2O2 (0.0005%)?
|
*other:96-well plate
*temperature:37C
*medium:H2O2 (0.0005%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:16240 H2O2
|
Crystal violet biofilm assay

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.Y55ba5ea3ab97c&page=6753&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:159 ! Escherichia coli K-12 MG1655

2016-12-15T19:40:53Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-15T19:38:52Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7654
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7655
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7656
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7657
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7658
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7659
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7660
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17234 glucose
|

|-
|
OMP_AN:7661
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:28757 fructose
|

|-
|
OMP_AN:7662
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7663
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17234 glucose
|

|-
|
OMP_AN:7664
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:28757 fructose
|

|-
|
OMP_AN:7665
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7666
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7667
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Honey (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Honey (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7668
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17234 glucose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7669
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28757 fructose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7670
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17992 sucrose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7671
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Lactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Lactose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17716 lactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7672
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Galactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Galactose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28260 galactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7673
|
NOT
|
OMP:0005129
|
altered biofilm
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Methylglyoxal (0.001%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Methylglyoxal (0.001%)
|
ECO:0000182
|
in vitro culture assay evidence
|

|
CHEBI:17158 methylglyoxal
|
Crystal violet biofilm assay
|-
|
OMP_AN:7674
|
NOT
|
OMP:0005129
|
altered biofilm
|
Relative to: OMP_AN:7666

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:H2O2 (0.00005%)?
|
*other:96-well plate
*temperature:37C
*medium:H2O2 (0.00005%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:16240 H2O2
|
Crystal violet biofilm assay

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-15T19:22:55Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7654
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7655
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7656
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7657
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7658
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7659
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7660
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17234 glucose
|

|-
|
OMP_AN:7661
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:28757 fructose
|

|-
|
OMP_AN:7662
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7663
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17234 glucose
|

|-
|
OMP_AN:7664
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:28757 fructose
|

|-
|
OMP_AN:7665
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7666
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-12T18:49:29Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7654
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7655
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7656
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7657
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7658
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7659
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7660
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17234 glucose
|

|-
|
OMP_AN:7661
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:28757 fructose
|

|-
|
OMP_AN:7662
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7663
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17234 glucose
|

|-
|
OMP_AN:7664
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:28757 fructose
|

|-
|
OMP_AN:7665
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17992 sucrose
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-12T18:47:24Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7654
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7655
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7656
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7657
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17234 glucose
|

|-
|
OMP_AN:7658
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:28757 fructose
|

|-
|
OMP_AN:7659
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7660
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17234 glucose
|

|-
|
OMP_AN:7661
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:28757 fructose
|

|-
|
OMP_AN:7662
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
CHEBI:17992 sucrose
|

|-
|
OMP_AN:7663
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17234 glucose
|

|-
|
OMP_AN:7664
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:28757 fructose
|

|-
|
OMP_AN:7665
|

|
OMP:0000109
|
presence of mucoid colonies
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
CHEBI:17992 sucrose
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:159 ! Escherichia coli K-12 MG1655

2016-12-12T18:14:23Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:159 ! Escherichia coli K-12 MG1655

2016-12-12T18:07:16Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-12T18:02:47Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-07T21:39:52Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="E583dddb20edcc" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli O157:H7 EDL933
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: O157:H7
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=83334&lvl=3&lin=f&keep=1&srchmode=1&unlock 83334]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/products/all/43895.aspx ATCC 43895]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.E583dddb20edcc&page=14162&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="H583dddb217fb5" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7573
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7574
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coladonin (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coladonin (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|

|
Biofilm formation assay
|-
|
OMP_AN:7575
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Coumarin (0.5 ug./mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Coumarin (0.5 ug./mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|
Biofilm formation assay
|-
|
OMP_AN:7576
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7573

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Umbelliferone (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= Umbelliferone (0.5 ug/mL)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|
Biofilm formation assay
|-
|
OMP_AN:7577
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7578
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7579
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7577

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7580
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7581
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7582
|
NOT
|
OMP:0005324
|
altered cell motility by swimming
|
Relative to: OMP_AN:7580

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:Umbelliferone (50 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7583
|

|
OMP:0000084
|
pilus phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:nylon filter
*temperature:37C
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|

|

|-
|
OMP_AN:7584
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7585
|

|
OMP:0000028
|
decreased number of pili
|
Relative to: OMP_AN:7583

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*other:nylon filter
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0005033
|
electron microscopy evidence
|
PMID:24837471
|
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7591
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7592
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
|

|-
|
OMP_AN:7593
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
|

|-
|
OMP_AN:7594
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
|

|-
|
OMP_AN:7595
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
|

|-
|
OMP_AN:7596
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7597
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
|

|-
|
OMP_AN:7598
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
|

|-
|
OMP_AN:7599
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
|

|-
|
OMP_AN:7600
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7601
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7602
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7591

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q93U24 csgA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7603
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7604
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7605
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7592

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0ABK8 csgB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7606
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7607
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7608
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7593

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XCE8 flhD
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7609
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7610
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7611
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7594

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:P0AF07 motB
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7612
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7613
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7614
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7615
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7616
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7595

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DI68 stx2
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7617
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7596

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8XAY7 lsrA
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7618
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7619
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7620
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7597

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q8X902 luxS
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7621
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7622
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7623
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7598

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
rrsG
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7624
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Coumarin (50 ug/mL)?
|
*temperature:37C
*medium:Coumarin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:28794 Coumarin
|

|-
|
OMP_AN:7625
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Umbelliferone (50 ug/mL)?
|
*temperature:37C
*medium:LB medium
*medium:Umbelliferone (50 ug/mL)
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:27510 Umbelliferone
|

|-
|
OMP_AN:7626
|

|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7599

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Esculetin (50 ug/mL)?
|
*temperature:37C
*medium:Esculetin (50 ug/mL)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:24837471
|
UniProtKB:Q7DH26 stx1
CHEBI:490095 Esculetin
|

|-
|
OMP_AN:7627
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7628
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Acacia honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Acacia honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7629
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
other:>= Polyfloral honey (0.1 %)?
|
*other:>= Polyfloral honey (0.1 %)
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7630
|

|
OMP:0007026
|
decreased biofilm formation
|
Relative to: OMP_AN:7627

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= Clover honey (0.1 %)?
|
*other:96-well plate
*temperature:37C
*medium:>= Clover honey (0.1 %)
*medium:LB medium
|
ECO:0000181
|
in vitro assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7631
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7632
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7633
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7634
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7635
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7636
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7637
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|-
|
OMP_AN:7638
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q8XAY7 lsrA
|

|-
|
OMP_AN:7639
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7631

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q93U24 csgA
|

|-
|
OMP_AN:7640
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7632

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:P43261 eae
|

|-
|
OMP_AN:7641
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7633

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q7DB80 espA
|

|-
|
OMP_AN:7642
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7634

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q7DB81 espD
|

|-
|
OMP_AN:7643
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7635

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:O85645 ler
|

|-
|
OMP_AN:7644
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7636

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q8XAY9 lsrB
|

|-
|
OMP_AN:7645
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7637

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0005524
|
DNA microarray evidence
|
PMID:22047137
|
UniProtKB:Q8XA21 lsrF
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14162.H583dddb217fb5&page=14162&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-07T21:20:45Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-07T21:02:52Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-07T20:57:53Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-02T20:48:54Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-02T20:45:29Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-01T21:11:55Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-01T21:09:54Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-12-01T20:49:04Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-30T20:34:20Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7569

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7572

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7551

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7586

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7587

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7588

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7589

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7590

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7563
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7564
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7586

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7565
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7587

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7566
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7588

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28487 Reserpine (RES)

|

|-
|
OMP_AN:7567
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7590

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7568
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7589

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7569
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7570
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7571
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7572
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7586
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
|

|-
|
OMP_AN:7587
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
|

|-
|
OMP_AN:7588
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
|

|-
|
OMP_AN:7589
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
|

|-
|
OMP_AN:7590
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-30T20:26:51Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7569

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7572

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7551

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7563
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7564
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7565
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7566
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28487 Reserpine (RES)

|

|-
|
OMP_AN:7567
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7568
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7569
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7570
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7571
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7572
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7586
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
|

|-
|
OMP_AN:7587
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
|

|-
|
OMP_AN:7588
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
|

|-
|
OMP_AN:7589
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
|

|-
|
OMP_AN:7590
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

PMID:24837471

2016-11-30T20:10:27Z

Kcunningham: New PMID: Page!

PMID on Demand placeholder

PMID:24837471

2016-11-30T20:10:27Z

Kcunningham: Fill PMID: Page!

{{RightTOC}}



{| id="X583f32339b0d7" class=" tableEdit PMID_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Citation
||
'''Lee, JH, Kim, YG, Cho, HS, Ryu, SY, Cho, MH and Lee, J''' Coumarins reduce biofilm formation and the virulence of Escherichia coli O157:H7. ''Phytomedicine'' '''21''':1037-42
|-
!align=left align='left' bgcolor='#CCCCFF' |Abstract
||
E. coli O157:H7 is the most common cause of hemorrhagic colitis, and no effective therapy exists for E. coli O157:H7 infection. Biofilm formation is closely related to E. coli O157:H7 infection and constitutes a mechanism of antimicrobial resistance. Hence, the antibiofilm or antivirulence approach provides an alternative to antibiotic strategies. Coumarin and its derivatives have a broad range of biological effects, and in this study, the antibiofilm activities of nine coumarins were investigated against E. coli O157:H7. Coumarin or umbelliferone at 50μg/ml was found to inhibit biofilm E. coli O157:H7 formation by more than 80% without affecting bacterial growth. Transcriptional analysis showed that coumarins repressed curli genes and motility genes in E. coli O157:H7, and these findings were in-line with observed reductions in fimbriae production, swarming motility, and biofilm formation. In addition, esculetin repressed Shiga-like toxin gene stx2 in E. coli O157:H7 and attenuated its virulence in vivo in the nematode Caenorhabditis elegans. These findings show that coumarins have potential use in antivirulence strategies against persistent E. coli O157:H7 infection.
|-
!align=left align='left' bgcolor='#CCCCFF' |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=24837471 PubMed]
Online version:[http://dx.doi.org/10.1016/j.phymed.2014.04.008 10.1016/j.phymed.2014.04.008]
|-
!align=left align='left' bgcolor='#CCCCFF' |Keywords
||
Animals; Anti-Bacterial Agents/pharmacology; Biofilms/drug effects; Biofilms/growth & development; Caenorhabditis elegans/drug effects; Coumarins/pharmacology; Escherichia coli O157/drug effects; Escherichia coli O157/pathogenicity; Escherichia coli O157/physiology; Escherichia coli O157/ultrastructure; Gene Expression Profiling; Gene Expression Regulation, Bacterial/drug effects; Umbelliferones/pharmacology; Virulence/drug effects

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14165.X583f32339b0d7&page=14165&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>


==Main Points of the Paper ==
{{LitSignificance}}

== Materials and Methods Used ==
{{LitMaterials}}

==Phenotype Annotations==
{{AnnotationTableHelp}}
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="E583f3233af223" class=" tableEdit Phenotype_Table_2"
|- align='left' bgcolor='#CCCCFF'
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14165.E583f3233af223&page=14165&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</div> || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==References==
{{RefHelp}}
<references/>

[[Category:Publication]]

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T20:10:01Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T20:06:51Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T19:41:45Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T19:38:29Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T19:33:58Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T19:12:59Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-30T19:07:48Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-29T19:59:37Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-29T19:57:38Z

Kcunningham: touch

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-29T19:57:38Z

Kcunningham: touch

OMP ST:6329 ! Escherichia coli O157:H7 EDL933

2016-11-29T19:57:37Z

Kcunningham: Page creation by SpecialNewPage

__TOC__

==Strain Summary==
<newTableEdit>
Template:Strain_info_table
</newTableEdit>

==Notes==

==Phenotype Annotation==
<newTableEdit>
Template:OMP_annotation_table
</newTableEdit>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-22T19:02:03Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7571

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7569

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7570

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7572

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7551

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7563
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7564
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7565
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7566
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28487 Reserpine (RES)

|

|-
|
OMP_AN:7567
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7568
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7569
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7570
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7571
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7572
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-22T18:42:47Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
*PMID:21821749
*PMID:22708802
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:25391152
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:22708802
*PMID:25391152
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7563
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7564
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7565
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7566
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28487 Reserpine (RES)

|

|-
|
OMP_AN:7567
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7568
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7569
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7570
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7571
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7572
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-22T18:27:09Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
*PMID:21821749
*PMID:22708802
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:25391152
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:22708802
*PMID:25391152
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7563
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7564
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7565
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7566
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28487 Reserpine (RES)

|

|-
|
OMP_AN:7567
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7568
|
NOT
|
OMP:0007080
|
altered gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28487 Reserpine (RES)
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-21T21:45:32Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="L5820de9fab227" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[https://www.atcc.org/Products/All/700928.aspx ATCC 700928]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.L5820de9fab227&page=14106&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J5820de9fb515c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7515
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7516
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7515

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:0.4% glucose
*medium:M9 minimal medium
*medium:cPACs (0.1 mg/mL)
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:21821749
|
UniProtKB:A0A0H2VAE3
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7517
|

|
OMP:0000029
|
presence of flagellum
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
*PMID:21821749
*PMID:22708802
|

|

|-
|
OMP_AN:7518
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:CP (10 mg/mL)?
|
*temperature:37C
*medium:CP (10 mg/mL)
*medium:LB broth
|
ECO:0005033
|
electron microscopy evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7519
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:25391152
|

|

|-
|
OMP_AN:7520
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7521
|

|
OMP:0006100
|
abolished cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7522
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
*PMID:21821749
*PMID:22708802
*PMID:25391152
|

|

|-
|
OMP_AN:7523
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:cPACs (0.1 mg/mL)?
|
*temperature:37C
*medium:cPACs (0.1 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
CHEBI:26267 cranberry-derived proanthocyanidins (cPACs)
|

|-
|
OMP_AN:7524
|

|
OMP:0006167
|
abolished cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= CP (10 mg/mL)?
|
*temperature:37C
*medium:>= CP (10 mg/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:21821749
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi NCBI Taxonomy ID:13750 cranberry powder (CP)]
|

|-
|
OMP_AN:7525
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:p(PfliC)-lux
*temperature:37C
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3

|

|-
|
OMP_AN:7526
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PG (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7527
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGP (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7528
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7525

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (1%)?
|
*other:p(PfliC)-lux
*temperature:37C
*medium:>= PGRE (1%)
*medium:LB medium
|
ECO:0000049
|
reporter gene assay evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7529
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|-
|
OMP_AN:7530
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (5%)?
|
*temperature:37C
*medium:>= PGRE (5%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7531
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7532
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7534
|

|
OMP:0000111
|
presence of cell motility by swimming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|

|

|-
|
OMP_AN:7535
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:30C
*medium:>= PGRE (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7536
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:30C
*medium:>= PG (10%)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7537
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7534

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
no differences
|
*temperature:30C
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7538
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7539
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PG (10%)?
|
*temperature:37C
*medium:>= PG (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Punicalagin (PG) is found in pomegranate tannins
|-
|
OMP_AN:7540
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGP (10%)?
|
*temperature:37C
*medium:>= PGP (10%)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate fruit powder (PGP) was tested
|-
|
OMP_AN:7541
|

|
OMP:0000215
|
decreased number of flagella
|
Relative to: OMP_AN:7517

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PGRE (10%)?
|
*temperature:37C
*medium:>= PGRE (10%)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:22708802
|
[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=22663 NCBI Taxonomy ID:22663 Pomegranate]
|
Pomegranate rind extract (PGRE) was tested
|-
|
OMP_AN:7543
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96 well plate
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7544
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7545
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7543

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*other:96 well plate
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7546
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7547
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7552

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*other:Polystyrene tubes
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:LB broth
|

|

|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7548
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7549
|

|
OMP:0007093
|
decreased cell motility by swimming
|
Relative to: OMP_AN:7519

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (0.5 ug/mL)?
|
*temperature:37C
*medium:>= RES (0.5 ug/mL)
*medium:swimming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7550
|

|
OMP:0007092
|
decreased cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7551
|
NOT
|
OMP:0005323
|
altered cell motility by swarming
|
Relative to: OMP_AN:7522

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= RES (5 ug/mL)?
|
*temperature:37C
*medium:>= RES (5 ug/mL)
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
CHEBI:28487 Reserpine (RES)
|

|-
|
OMP_AN:7552
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:Polystyrene tubes
*temperature:37C
*medium:LB broth
|

|

|
PMID:25391152
|

|

|-
|
OMP_AN:7553
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|

|

|-
|
OMP_AN:7554
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V815 motA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7555
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0005803
|
motility assay evidence
|
PMID:25391152
|
UniProtKB:A0A0H2V9E2 motB
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7556
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VGH0 fimA
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7557
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (0.5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (0.5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P66797 uvrY
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7558
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:A0A0H2VAE3 fliC
CHEBI:28821 Piperine (PIP)
|

|-
|
OMP_AN:7559
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7553

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:>= PIP (5 ug/mL)?
|
*temperature:37C
*medium:>= PIP (5 ug/mL)
*medium:LB broth
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:25391152
|
UniProtKB:P62608 papA
CHEBI:28821 Piperine (PIP)
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14106.J5820de9fb515c&page=14106&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-21T21:32:38Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T21:22:24Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T21:20:42Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T21:18:20Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T21:08:37Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T20:57:00Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6326 ! Escherichia coli UPEC CFT073

2016-11-18T20:48:21Z

Kcunningham: Table edited by Kcunningham via TableEdit

OMP ST:6328 ! Escherichia coli UPEC CFT073 fliC(del)

2016-11-14T18:58:56Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="W582a08ce314b7" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073 fliC(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherchia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
fliC(del)::kanR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:16239569
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:6326 ! Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.W582a08ce314b7&page=14149&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:OMP ST:6326 ! Escherichia coli UPEC CFT073 derivatives]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J582a08ce34319" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:7542
|

|
OMP:0000268
|
decreased gene expression
|
Relative to: OMP_AN:7529

<hr>Genotype differences: 
+fliC(del) -
<hr>Condition differences: 
no differences
|
*temperature:37C
*medium:LB medium
|
ECO:0000112
|
western blot evidence
|
PMID:22708802
|
UniProtKB:A0A0H2VAE3
|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.J582a08ce34319&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

PMID:16239569

2016-11-14T18:57:25Z

Kcunningham: Fill PMID: Page!

{{RightTOC}}



{| id="V582a0914c359e" class=" tableEdit PMID_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Citation
||
'''Lane, MC, Lockatell, V, Monterosso, G, Lamphier, D, Weinert, J, Hebel, JR, Johnson, DE and Mobley, HL''' (2005) Role of motility in the colonization of uropathogenic Escherichia coli in the urinary tract. ''Infect. Immun.'' '''73''':7644-56
|-
!align=left align='left' bgcolor='#CCCCFF' |Abstract
||
Uropathogenic Escherichia coli (UPEC) causes most uncomplicated urinary tract infections (UTIs) in humans. Flagellum-mediated motility and chemotaxis have been suggested to contribute to virulence by enabling UPEC to escape host immune responses and disperse to new sites within the urinary tract. To evaluate their contribution to virulence, six separate flagellar mutations were constructed in UPEC strain CFT073. The mutants constructed were shown to have four different flagellar phenotypes: fliA and fliC mutants do not produce flagella; the flgM mutant has similar levels of extracellular flagellin as the wild type but exhibits less motility than the wild type; the motAB mutant is nonmotile; and the cheW and cheY mutants are motile but nonchemotactic. Virulence was assessed by transurethral independent challenges and cochallenges of CBA mice with the wild type and each mutant. CFU/ml of urine or CFU/g bladder or kidney was determined 3 days postinoculation for the independent challenges and at 6, 16, 48, 60, and 72 h postinoculation for the cochallenges. While these mutants colonized the urinary tract during independent challenge, each of the mutants was outcompeted by the wild-type strain to various degrees at specific time points during cochallenge. Altogether, these results suggest that flagella and flagellum-mediated motility/chemotaxis may not be absolutely required for virulence but that these traits contribute to the fitness of UPEC and therefore significantly enhance the pathogenesis of UTIs caused by UPEC.
|-
!align=left align='left' bgcolor='#CCCCFF' |Links
||
[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16239569 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1273871 PMC1273871]
Online version:[http://dx.doi.org/10.1128/IAI.73.11.7644-7656.2005 10.1128/IAI.73.11.7644-7656.2005]
|-
!align=left align='left' bgcolor='#CCCCFF' |Keywords
||
Animals; Escherichia coli/genetics; Escherichia coli/physiology; Escherichia coli Infections/microbiology; Escherichia coli Infections/urine; Escherichia coli Proteins/genetics; Escherichia coli Proteins/physiology; Female; Flagella/genetics; Flagella/physiology; Genetic Complementation Test; Kidney/microbiology; Mice; Mice, Inbred CBA; Mutation; Phenotype; Time Factors; Urinary Bladder/microbiology; Urinary Tract Infections/microbiology; Urinary Tract Infections/urine

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14150.V582a0914c359e&page=14150&pagename={{FULLPAGENAMEE}}&type=1&template=PMID_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>


==Main Points of the Paper ==
{{LitSignificance}}

== Materials and Methods Used ==
{{LitMaterials}}

==Phenotype Annotations==
{{AnnotationTableHelp}}
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="V582a0914df952" class=" tableEdit Phenotype_Table_2"
|- align='left' bgcolor='#CCCCFF'
!|Phenotype of!!Taxon Information!!Genotype Information (if known)!!Condition Information!!OMP ID!!OMP Term Name!!ECO ID!!ECO Term Name!!Notes!!Status

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14150.V582a0914df952&page=14150&pagename={{FULLPAGENAMEE}}&type=0&template=Phenotype_Table_2 edit table]</div> || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==References==
{{RefHelp}}
<references/>

[[Category:Publication]]

PMID:16239569

2016-11-14T18:57:24Z

Kcunningham: New PMID: Page!

PMID on Demand placeholder

OMP ST:6328 ! Escherichia coli UPEC CFT073 fliC(del)

2016-11-14T18:57:17Z

Kcunningham: Table edited by Kcunningham via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="W582a08ce314b7" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073 fliC(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherchia coli
*Subspecies and/or strain: UPEC
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=199310 199310]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
fliC(del)::kanR
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:16239569
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:6326 ! Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.W582a08ce314b7&page=14149&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:OMP ST:6326 ! Escherichia coli UPEC CFT073 derivatives]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J582a08ce34319" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.J582a08ce34319&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6328 ! Escherichia coli UPEC CFT073 fliC(del)

2016-11-14T18:56:15Z

Kcunningham: touch

__TOC__

==Strain Summary==
<protect>

{| id="W582a08ce314b7" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli UPEC CFT073 fliC(del)
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:16239569
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:6326 ! Escherichia coli UPEC CFT073
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.W582a08ce314b7&page=14149&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>
[[Category:OMP ST:6326 ! Escherichia coli UPEC CFT073 derivatives]]
[[Category:Strains with genotype identical to parent]]
</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J582a08ce34319" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!not!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.14149.J582a08ce34319&page=14149&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
<noinclude>

</noinclude>
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:6328 ! Escherichia coli UPEC CFT073 fliC(del)

2016-11-14T18:56:14Z

Kcunningham: Page creation by SpecialNewPage