OMPwiki - User contributions [en]

OMP ST:74787 ! Escherichia coli K-12 apaH::miniTn10

2020-02-21T17:06:52Z

GabriellaPorter: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="J5e500c50bb472" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:27826291
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.J5e500c50bb472&page=32656&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5e500c50dece6" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37558
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:37557

<hr>Genotype differences: 
+apaH
<hr>Condition differences: 
no differences
|
*other:24 h incubation
*pH:4.50
*temperature:30C
*medium:LB
|
ECO:0001847
|

|
PMID:27826291
|

|
table 3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.Q5e500c50dece6&page=32656&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74787 ! Escherichia coli K-12 apaH::miniTn10

2020-02-21T17:03:48Z

GabriellaPorter: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="J5e500c50bb472" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome:
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:27826291
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.J5e500c50bb472&page=32656&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5e500c50dece6" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37558
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:37557

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
:?
other:?24 h incubation
pH:?4.50
temperature:?30C
medium:?LB
|

|

|

|

|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.Q5e500c50dece6&page=32656&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74787 ! Escherichia coli K-12 apaH::miniTn10

2020-02-21T17:02:52Z

GabriellaPorter: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==


{| id="J5e500c50bb472" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:27826291
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.J5e500c50bb472&page=32656&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5e500c50dece6" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:37558
|

|
OMP:0007008
|
decreased population growth at acidic pH
|
Relative to: OMP_AN:37557

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
:?
other:?24 h incubation
pH:?4.50
temperature:?30C
medium:?LB
|

|

|

|

|

|

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.Q5e500c50dece6&page=32656&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:74787 ! Escherichia coli K-12 apaH::miniTn10

2020-02-21T16:58:56Z

GabriellaPorter: Page creation by SpecialNewPage

new strain page placeholder

OMP ST:74787 ! Escherichia coli K-12 apaH::miniTn10

2020-02-21T16:58:56Z

GabriellaPorter: make strain info table SpecialNewPage

__TOC__

==Strain Summary==


{| id="J5e500c50bb472" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 apaH::miniTn10
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
PMID:27826291
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||
parent:OMP ST:159 ! Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.J5e500c50bb472&page=32656&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}


==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Q5e500c50dece6" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=2ccfb3c7bf1208312f02a69e64bfd9e0.32656.Q5e500c50dece6&page=32656&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:159 ! Escherichia coli K-12 MG1655

2020-02-21T16:50:46Z

GabriellaPorter: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="U55ba5ea3a81a6" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
CGSC #6300, ATCC 47076
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center]
*PMID:8501045
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center], [http://www.atcc.org/products/all/47076.aspx#generalinformation ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.U55ba5ea3a81a6&page=6753&pagename={{FULLPAGENAMEE}}&type=1&template=Strain_info_table edit table]</div> ||
|}
<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y55ba5ea3ab97c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:357
|

|
OMP:0007253
|
presence of host colonization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:1353
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17391508
|

|

|-
|
OMP_AN:7646
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7647
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7648
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7649
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7650
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7646

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7651
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7647

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7652
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7648

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7653
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7649

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7675
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7676
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Honey (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Honey (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7677
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17234 glucose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7678
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28757 fructose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7679
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17992 sucrose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7680
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Lactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Lactose (0.5%)
|
ECO:0000182
|

|
PMID:22047137
|
CHEBI:17716 lactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7681
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Galactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Galactose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28260 galactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7682
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Methylglyoxal (0.001%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Methylglyoxal (0.001%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17158 methylglyoxal
|
Crystal violet biofilm assay
|-
|
OMP_AN:7683
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:H2O2 (0.0005%)?
|
*other:96-well plate
*temperature:37C
*medium:H2O2 (0.0005%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:16240 H2O2
|
Crystal violet biofilm assay
|-
|
OMP_AN:8278
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
*medium:NaCl (1%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:8307
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:27250
|

|
OMP:0007181
|
presence of anaerobic respiration
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:H2O2 (5 uM) as terminal electron acceptor
*other:anoxic
*temperature:37C
*medium:glycerol minimal medium
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:28696311
|
CHEBI:16240 hydrogen peroxide
|
Figure 8
|-
|
OMP_AN:27302
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:27303
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:20C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:37557
|

|
presence of growth at acidic pH
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:24 h incubation
*pH:4.50
*temperature:30C
*medium:LB
|
ECO:0001847
|

|
PMID:27826291
|

|
table 3

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</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>

OMP ST:159 ! Escherichia coli K-12 MG1655

2020-02-21T16:39:13Z

GabriellaPorter: Table edited by $2 via TableEdit

__TOC__

==Strain Summary==
<protect>

{| id="U55ba5ea3a81a6" class=" tableEdit Strain_info_table"

|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Name
||
Escherichia coli K-12 MG1655
|-
!align=left align='left' bgcolor='#CCCCFF' |Synonyms
||
CGSC #6300, ATCC 47076
|-
!align=left align='left' bgcolor='#CCCCFF' |Taxon Information
||
*Pangenome: Escherichia coli
*Subspecies and/or strain: K-12
*NCBI Taxonomy ID: [https://www.ncbi.nlm.nih.gov/taxonomy?term=83333 83333]
|-
!align=left align='left' bgcolor='#CCCCFF' |Genotype
||
F- Lambda- rph-1
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain Reference
||
*[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center]
*PMID:8501045
|-
!align=left align='left' bgcolor='#CCCCFF' |Strain availability
||
[http://cgsc.biology.yale.edu/Strain.php?ID=4837 Coli Genetic Stock Center], [http://www.atcc.org/products/all/47076.aspx#generalinformation ATCC]
|-
!align=left align='left' bgcolor='#CCCCFF' |Ancestry
||

|-
!align=left align='left' bgcolor='#CCCCFF' |Annotated phenotypes
||

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<noinclude>

</noinclude>
</protect>

==Notes==

==Phenotype Annotation==
<protect>

{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y55ba5ea3ab97c" class=" tableEdit OMP_annotation_table dataTable"
|- align='left' bgcolor='#CCCCFF'
!|Annotation ID!!Qualifier!!OMP ID!!OMP term name!!Relative phenotype information!!Experimental condition!!ECO ID!!ECO term name!!Reference!!Annotation Extension!!Notes
|-
|
OMP_AN:357
|

|
OMP:0007253
|
presence of host colonization
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|

|
ECO:0001027
|
colony counting evidence
|
PMID:17709419
|

|

|-
|
OMP_AN:1353
|

|
OMP:0000067
|
presence of cell motility by swarming
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:swarming motility medium
|
ECO:0005803
|
motility assay evidence
|
PMID:17391508
|

|

|-
|
OMP_AN:7646
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7647
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7648
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7649
|

|
OMP:0000253
|
gene expression phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7650
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7646

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P28307 csgA
|

|-
|
OMP_AN:7651
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7647

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P77257 lsrA
|

|-
|
OMP_AN:7652
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7648

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76142 lsrB
|

|-
|
OMP_AN:7653
|

|
OMP:0000267
|
increased gene expression
|
Relative to: OMP_AN:7649

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Acacia honey (0.5%)?
|
*temperature:37C
*medium:Acacia honey (0.5%)
*medium:LB medium
|
ECO:0000109
|
reverse transcription polymerase chain reaction evidence
|
PMID:22047137
|
UniProtKB:P76143 lsrF
|

|-
|
OMP_AN:7675
|

|
OMP:0000176
|
biofilm phenotype
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:96-well plate
*temperature:37C
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7676
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Honey (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Honey (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|

|
Crystal violet biofilm assay
|-
|
OMP_AN:7677
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Glucose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Glucose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17234 glucose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7678
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Fructose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Fructose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28757 fructose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7679
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Sucrose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Sucrose (0.5%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17992 sucrose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7680
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Lactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Lactose (0.5%)
|
ECO:0000182
|

|
PMID:22047137
|
CHEBI:17716 lactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7681
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Galactose (0.5%)?
|
*other:96-well plate
*temperature:37C
*medium:Galactose (0.5%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:28260 galactose
|
Crystal violet biofilm assay
|-
|
OMP_AN:7682
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:Methylglyoxal (0.001%)?
|
*other:96-well plate
*temperature:37C
*medium:LB medium
*medium:Methylglyoxal (0.001%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:17158 methylglyoxal
|
Crystal violet biofilm assay
|-
|
OMP_AN:7683
|

|
OMP:0007020
|
increased biofilm formation
|
Relative to: OMP_AN:7675

<hr>Genotype differences: 
no differences
<hr>Condition differences: 
medium:H2O2 (0.0005%)?
|
*other:96-well plate
*temperature:37C
*medium:H2O2 (0.0005%)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:22047137
|
CHEBI:16240 H2O2
|
Crystal violet biofilm assay
|-
|
OMP_AN:8278
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
*medium:NaCl (1%)
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:8307
|

|
OMP:0005337
|
absence of cell lysis
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:RT
*medium:CPRG (20 ug/mL)
*medium:IPTG (100 uM)
*medium:LB medium
|
ECO:0000182
|
in vitro culture assay evidence
|
PMID:24391520
|

|

|-
|
OMP_AN:27250
|

|
OMP:0007181
|
presence of anaerobic respiration
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*medium:H2O2 (5 uM) as terminal electron acceptor
*other:anoxic
*temperature:37C
*medium:glycerol minimal medium
|
ECO:0001165
|
colony counting evidence used in manual assertion
|
PMID:28696311
|
CHEBI:16240 hydrogen peroxide
|
Figure 8
|-
|
OMP_AN:27302
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:37C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:27303
|

|
OMP:0007595
|
presence of population growth
|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*temperature:20C
*medium:LB broth
|
ECO:0001258
|
spectrophotometry evidence used in manual assertion
|
PMID:25777676
|

|
Figure 1
|-
|
OMP_AN:37557
|

|
presence of growth at acidic pH
|

|
Relative to:

<hr>Genotype differences: 
Nothing to compare 
<hr>Condition differences: 
Nothing to compare 
|
*other:24 h incubation
*pH:4.50
*temperature:30C
*medium:LB
|

|

|
PMID:27826291
|

|
table 3

|- class="tableEdit_footer"
|<div class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=d41d8cd98f00b204e9800998ecf8427e.6753.Y55ba5ea3ab97c&page=6753&pagename={{FULLPAGENAMEE}}&type=0&template=OMP_annotation_table edit table]</div> || || || || || || || || || ||
|}
</protect>

==Additional Information==

==Links==

==References==
{{RefHelp}}<references/>